Anilios waitii

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) rAniWai1 45.24 Gbp N/A 30.0 GiB
Dovetail Genomics rAniWai1 47.34 Gbp N/A 33.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 21 August 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rAniWai1 PacBio HiFi (.fq) 45.24 Gbp N/A 30.0 GiB
Dovetail Genomics 47.34 Gbp N/A 33.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 21 August 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 10 September 2025
rAniWai1.HiC.hap1.20250910.fasta.gz (460.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 6 24.79 Mbp 1 381.60 Mbp
20 15 15.53 Mbp 1 381.60 Mbp
30 28 11.51 Mbp 2 315.47 Mbp
40 45 9.04 Mbp 2 315.47 Mbp
50 66 7.26 Mbp 3 236.42 Mbp
60 95 5.16 Mbp 4 129.50 Mbp
70 134 3.63 Mbp 6 110.98 Mbp
80 195 2.23 Mbp 7 92.62 Mbp
90 300 1.15 Mbp 9 66.51 Mbp
100 767 10.30 Kbp 127 10.30 Kbp
1.000x 767 1.71 Gbp 127 1.71 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 10 September 2025
rAniWai1.HiC.hap2.20250910.fasta.gz (460.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 7 23.71 Mbp 1 375.54 Mbp
20 15 17.94 Mbp 1 375.54 Mbp
30 26 14.36 Mbp 2 313.91 Mbp
40 39 11.05 Mbp 2 313.91 Mbp
50 57 8.06 Mbp 3 236.83 Mbp
60 82 5.77 Mbp 4 128.60 Mbp
70 120 3.72 Mbp 6 110.86 Mbp
80 176 2.41 Mbp 7 93.18 Mbp
90 276 1.28 Mbp 10 32.49 Mbp
100 724 11.90 Kbp 114 11.90 Kbp
1.000x 724 1.71 Gbp 114 1.71 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 11 September 2025
rAniWai1.MT.20250911.fasta.gz (5.2 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/rAniWai1.yml (view)
species: Anilios waitii
specimem: rAniWai1
projects:
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
combine_for_curation: true
hap1: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/rAniWai1.HiC.hap1.20250910.fasta.gz
hap2: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/rAniWai1.HiC.hap2.20250910.fasta.gz
pretext_hap1: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/s2/rAniWai1_hap1__s2_heatmap.pretext
pretext_hap2: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/s2/rAniWai1_hap2__s2_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/evaluation/merqury/rAniWai1_png/
pacbio_read_dir: s3://genomeark/species/Anilios_waitii/rAniWai1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Anilios_waitii/rAniWai1/genomic_data/dovetail/
pipeline:
  - hifiasm (0.25.0+galaxy0)
  - yahs (1.2a.2+galaxy2)
  - VGP0 mitoHiFi workflow (v0.2.2)
  - VGP1 genomic profiling workflow (v0.4)
  - VGP4 HiFi HiC assembly workflow (v0.3.11)
  - VGP8 HiC scaffolding workflow (v2.2)
  - VGP9 decontamination workflow (v0.7) with database PlusPF 2022
  - Pre-curation worklfow (v1.0beta6)
notes: This was a Hifiasm-HiC assembly of rAniWai1 resulting in two haplotype assemblies.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.