Copyright Antoine Fouquet, used with permission
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (subreads) | aAnoBae1 | 562.62 Gbp | N/A | 1.3 TiB | |
PacBio HiFi (.fq) | aAnoBae1 | 144.65 Gbp | N/A | 116.0 GiB | |
Arima | aAnoBae1 | 360.39 Gbp | N/A | 187.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 September 2024.
Coverage based on genome size .
Last upload on 11 September 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
aAnoBae1 | PacBio HiFi (subreads) | 562.62 Gbp | N/A | 1.3 TiB | |
PacBio HiFi (.fq) | 144.65 Gbp | N/A | 116.0 GiB | ||
Arima | 360.39 Gbp | N/A | 187.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 September 2024.
Coverage based on genome size .
Last upload on 11 September 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 17 June 2023
aAnoBae1.HiC.hap1.20230617.fasta.gz (1.6 GiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 17 June 2023
aAnoBae1.HiC.hap1.20230617.fasta.gz (1.6 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 65 | 7.29 Mbp | 1 | 1.02 Gbp |
20 | 165 | 5.52 Mbp | 2 | 0.95 Gbp |
30 | 292 | 4.46 Mbp | 2 | 0.95 Gbp |
40 | 449 | 3.57 Mbp | 3 | 0.70 Gbp |
50 | 647 | 2.80 Mbp | 4 | 0.55 Gbp |
60 | 904 | 2.15 Mbp | 6 | 348.65 Mbp |
70 | 1243 | 1.54 Mbp | 8 | 258.80 Mbp |
80 | 1748 | 1.01 Mbp | 11 | 210.09 Mbp |
90 | 2635 | 474.50 Kbp | 15 | 31.94 Mbp |
100 | 7393 | 2.32 Kbp | 3700 | 2.32 Kbp |
1.000x | 7393 | 6.26 Gbp | 3700 | 6.26 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 17 June 2023
aAnoBae1.HiC.hap2.20230617.fasta.gz (1.6 GiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 17 June 2023
aAnoBae1.HiC.hap2.20230617.fasta.gz (1.6 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 56 | 8.27 Mbp | 1 | 1.39 Gbp |
20 | 144 | 6.18 Mbp | 1 | 1.39 Gbp |
30 | 255 | 4.82 Mbp | 2 | 1.36 Gbp |
40 | 401 | 3.72 Mbp | 2 | 1.36 Gbp |
50 | 588 | 2.88 Mbp | 3 | 0.71 Gbp |
60 | 834 | 2.19 Mbp | 4 | 0.60 Gbp |
70 | 1165 | 1.60 Mbp | 5 | 265.21 Mbp |
80 | 1637 | 1.05 Mbp | 8 | 176.51 Mbp |
90 | 2422 | 0.54 Mbp | 13 | 48.64 Mbp |
100 | 6077 | 4.84 Kbp | 2497 | 4.84 Kbp |
1.000x | 6077 | 6.13 Gbp | 2497 | 6.13 Gbp |
NG based on genome size .
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.