Aythya marila
greater scaup
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bAytMar2 | 67.24 Gbp | 49.82x | 20.6 GiB | |
Arima | bAytMar2 | 163.76 Gbp | 121.34x | 43.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 August 2024.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 August 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bAytMar2 | PacBio HiFi (.bam) | 67.24 Gbp | 49.82x | 20.6 GiB | |
Arima | 163.76 Gbp | 121.34x | 43.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 August 2024.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 August 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 6 August 2024
bAytMar2.hap1.asm.20240806.fasta.gz (292.2 MiB)
Quality: not computed
Version assembly_cambridge from 6 August 2024
bAytMar2.hap1.asm.20240806.fasta.gz (292.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 16 | 7.24 Mbp | 1 | 206.60 Mbp |
20 | 37 | 5.57 Mbp | 2 | 154.97 Mbp |
30 | 64 | 4.29 Mbp | 3 | 107.20 Mbp |
40 | 99 | 3.55 Mbp | 4 | 77.04 Mbp |
50 | 142 | 2.86 Mbp | 6 | 64.88 Mbp |
60 | 197 | 2.06 Mbp | 10 | 26.70 Mbp |
70 | 277 | 1.27 Mbp | 17 | 16.36 Mbp |
80 | 425 | 0.60 Mbp | 29 | 6.23 Mbp |
90 | 1592 | 19.59 Kbp | 958 | 19.91 Kbp |
100 | 0 | 0 | ||
0.903x | 1951 | 1.22 Gbp | 1324 | 1.22 Gbp |
NG based on genome size 1.35 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 6 August 2024
bAytMar2.hap2.asm.20240806.fasta.gz (260.9 MiB)
Quality: not computed
Version assembly_cambridge from 6 August 2024
bAytMar2.hap2.asm.20240806.fasta.gz (260.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 16 | 7.33 Mbp | 1 | 206.78 Mbp |
20 | 38 | 5.10 Mbp | 2 | 156.78 Mbp |
30 | 67 | 4.06 Mbp | 3 | 119.41 Mbp |
40 | 104 | 3.26 Mbp | 4 | 76.46 Mbp |
50 | 152 | 2.48 Mbp | 7 | 31.97 Mbp |
60 | 219 | 1.65 Mbp | 12 | 21.73 Mbp |
70 | 329 | 0.85 Mbp | 20 | 11.99 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.784x | 1039 | 1.06 Gbp | 491 | 1.06 Gbp |
NG based on genome size 1.35 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 6 August 2024
bAytMar2.MT.20240806.fasta.gz (5.1 KiB)
Quality: not computed
Version assembly_MT_cambridge from 6 August 2024
bAytMar2.MT.20240806.fasta.gz (5.1 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.