Balaenoptera borealis

sei whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mBalBor
  name: Balaenoptera borealis
  taxon_id: 9768
  common_name: sei whale
  order:
    name: Cetacea
  family:
    name: Balaenopteridae
  individuals:
    - short_name: mBalBor1
      biosample_id: SAMEA114493134
      sex: female
  genome_size: 2865540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mBalBor1 131.41 Gbp 45.86x 44.0 GiB
Arima mBalBor1 510.51 Gbp 178.15x 139.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.87 Gbp.
Last upload on 23 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mBalBor1 PacBio HiFi (.bam) 131.41 Gbp 45.86x 44.0 GiB
Arima 510.51 Gbp 178.15x 139.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.87 Gbp.
Last upload on 23 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 31 May 2024
mBalBor1.hap1.asm.20240531.fasta.gz (721.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 7.62 Mbp 2 145.93 Mbp
20 75 5.75 Mbp 5 118.12 Mbp
30 129 4.89 Mbp 7 106.65 Mbp
40 194 3.88 Mbp 10 93.98 Mbp
50 278 3.08 Mbp 13 89.01 Mbp
60 384 2.39 Mbp 17 81.65 Mbp
70 520 1.87 Mbp 20 69.21 Mbp
80 698 1.37 Mbp 27 19.84 Mbp
90 955 0.90 Mbp 123 1.51 Mbp
100 1373 0.52 Mbp 430 0.63 Mbp
1.144x 4014 3.28 Gbp 2975 3.28 Gbp
NG based on genome size 2.87 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 31 May 2024
mBalBor1.hap2.asm.20240531.fasta.gz (694.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 7.45 Mbp 2 144.28 Mbp
20 75 5.80 Mbp 4 128.79 Mbp
30 129 4.71 Mbp 7 113.09 Mbp
40 197 3.73 Mbp 9 105.95 Mbp
50 285 2.96 Mbp 12 94.36 Mbp
60 395 2.28 Mbp 15 89.04 Mbp
70 542 1.65 Mbp 19 71.01 Mbp
80 750 1.12 Mbp 23 60.43 Mbp
90 1085 0.64 Mbp 165 0.93 Mbp
100 1813 222.10 Kbp 777 235.85 Kbp
1.043x 3093 2.99 Gbp 2045 2.99 Gbp
NG based on genome size 2.87 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 31 May 2024
mBalBor1.MT.20240531.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.