Balaenoptera physalus

Fin whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mBalPhy
  name: Balaenoptera physalus
  taxon_id: 9770
  common_name: Fin whale
  order:
    name: Cetacea
  family:
    name: Balaenopteridae
  individuals:
    - short_name: mBalPhy2
      biosample_id: SAMEA114493136
      sex: male
  genome_size: 2865540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mBalPhy2 73.45 Gbp 25.63x 24.5 GiB
Arima mBalPhy2 403.62 Gbp 140.85x 111.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.87 Gbp.
Last upload on 23 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mBalPhy2 PacBio HiFi (.bam) 73.45 Gbp 25.63x 24.5 GiB
Arima 403.62 Gbp 140.85x 111.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.87 Gbp.
Last upload on 23 May 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 1 June 2024
mBalPhy2.hap1.asm.20240601.fasta.gz (743.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 36 6.68 Mbp 2 178.20 Mbp
20 87 4.94 Mbp 4 143.52 Mbp
30 152 3.97 Mbp 6 114.73 Mbp
40 234 3.19 Mbp 9 107.13 Mbp
50 335 2.51 Mbp 11 105.66 Mbp
60 462 2.05 Mbp 14 93.30 Mbp
70 622 1.59 Mbp 17 86.65 Mbp
80 826 1.25 Mbp 22 38.65 Mbp
90 1091 0.93 Mbp 112 1.54 Mbp
100 1465 0.63 Mbp 372 0.83 Mbp
1.200x 4154 3.44 Gbp 2817 3.44 Gbp
NG based on genome size 2.87 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 1 June 2024
mBalPhy2.hap2.asm.20240601.fasta.gz (669.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 35 6.58 Mbp 2 176.97 Mbp
20 85 5.07 Mbp 4 115.27 Mbp
30 150 3.86 Mbp 6 113.83 Mbp
40 235 3.03 Mbp 9 106.92 Mbp
50 343 2.33 Mbp 12 93.52 Mbp
60 483 1.78 Mbp 15 89.44 Mbp
70 673 1.32 Mbp 18 70.12 Mbp
80 944 0.84 Mbp 32 2.82 Mbp
90 1425 412.59 Kbp 329 0.53 Mbp
100 3483 28.48 Kbp 2233 29.00 Kbp
1.002x 3806 2.87 Gbp 2564 2.87 Gbp
NG based on genome size 2.87 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 1 June 2024
mBalPhy2.MT.20240601.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.