Coloeus monedula

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bColMon
  name: Coloeus monedula
  taxon_id: 30423
  common_name: 
  order:
    name: Passeriformes
  family:
    name: Corvidae
  individuals:
    - short_name: bColMon1
      biosample_id: SAMEA115433023
      sex: female
  genome_size: 1222500000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bColMon1 83.55 Gbp 68.34x 24.5 GiB
Arima bColMon1 126.66 Gbp 103.60x 33.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.22 Gbp.
Last upload on 20 July 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bColMon1 PacBio HiFi (.bam) 83.55 Gbp 68.34x 24.5 GiB
Arima 126.66 Gbp 103.60x 33.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.22 Gbp.
Last upload on 20 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 22 July 2024
bColMon1.hap1.asm.20240722.fasta.gz (346.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.83 Mbp 1 157.23 Mbp
20 28 6.53 Mbp 2 120.08 Mbp
30 49 5.24 Mbp 3 118.89 Mbp
40 75 4.23 Mbp 5 73.48 Mbp
50 108 3.34 Mbp 6 70.76 Mbp
60 150 2.53 Mbp 9 38.03 Mbp
70 207 1.85 Mbp 13 21.74 Mbp
80 287 1.26 Mbp 18 19.30 Mbp
90 427 0.61 Mbp 38 1.85 Mbp
100 852 120.81 Kbp 345 133.55 Kbp
1.024x 1423 1.25 Gbp 891 1.25 Gbp
NG based on genome size 1.22 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 22 July 2024
bColMon1.hap2.asm.20240722.fasta.gz (312.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.00 Mbp 1 157.88 Mbp
20 30 6.03 Mbp 2 119.59 Mbp
30 52 4.88 Mbp 3 119.33 Mbp
40 79 4.15 Mbp 5 73.66 Mbp
50 113 3.04 Mbp 6 64.96 Mbp
60 160 2.20 Mbp 10 26.66 Mbp
70 228 1.44 Mbp 15 20.99 Mbp
80 352 0.65 Mbp 26 6.98 Mbp
90 970 56.69 Kbp 498 60.27 Kbp
100 0 0
0.921x 1875 1.13 Gbp 1394 1.13 Gbp
NG based on genome size 1.22 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 July 2024
bColMon1.MT.20240722.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.