Poromitra crassiceps

crested bigscale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fPorCra
  name: Poromitra crassiceps
  taxon_id: 88708
  common_name: crested bigscale
  order:
    name: Stephanoberyciformes
  family:
    name: Melamphaidae
  individuals:
    - short_name: fPorCra3
      biosample_id: SAMEA8748810
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
public domain, Emma Kissling (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fPorCra3 67.95 Gbp N/A 115.9 GiB
Arima fPorCra3 132.02 Gbp N/A 60.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPorCra3 PacBio HiFi (.bam) 67.95 Gbp N/A 115.9 GiB
Arima 132.02 Gbp N/A 60.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 August 2023.
Assemblies
Individual 3 Haplotype 1 Assembly
Version assembly_cambridge from 5 April 2024
fPorCra3.hap1.asm.20240405.fasta.gz (432.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 49 2.68 Mbp 2 119.26 Mbp
20 124 1.84 Mbp 3 84.54 Mbp
30 228 1.41 Mbp 6 54.94 Mbp
40 364 1.07 Mbp 9 52.61 Mbp
50 537 0.83 Mbp 13 38.92 Mbp
60 761 0.65 Mbp 18 28.67 Mbp
70 1060 480.28 Kbp 25 19.86 Mbp
80 1485 316.27 Kbp 34 10.66 Mbp
90 2234 152.60 Kbp 145 0.57 Mbp
100 5906 1.00 Kbp 2920 1.00 Kbp
1.000x 5906 1.66 Gbp 2920 1.66 Gbp
NG based on genome size .
Individual 3 Haplotype 2 Assembly
Version assembly_cambridge from 5 April 2024
fPorCra3.hap2.asm.20240405.fasta.gz (400.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 45 2.51 Mbp 2 119.16 Mbp
20 116 1.89 Mbp 3 92.14 Mbp
30 206 1.52 Mbp 5 56.66 Mbp
40 320 1.19 Mbp 8 52.97 Mbp
50 468 0.89 Mbp 12 40.27 Mbp
60 661 0.69 Mbp 16 31.72 Mbp
70 920 0.51 Mbp 21 23.18 Mbp
80 1277 348.17 Kbp 29 15.11 Mbp
90 1848 197.90 Kbp 63 1.70 Mbp
100 4214 1.00 Kbp 1501 1.00 Kbp
1.000x 4214 1.52 Gbp 1501 1.52 Gbp
NG based on genome size .
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 April 2024
fPorCra3.MT.20240405.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.