Artibeus lituratus

great fruit-eating bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mArtLit
  name: Artibeus lituratus
  taxon_id: 27634
  common_name: great fruit-eating bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
    - short_name: mArtLit1
  genome_size: 2577030000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mArtLit1 125.61 Gbp 48.74x 93.3 GiB
PacBio HiFi (.bam) mArtLit1 571.21 Gbp 221.65x 424.1 GiB
Arima mArtLit1 170.96 Gbp 66.34x 93.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.58 Gbp.
Last upload on 15 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mArtLit1 PacBio HiFi (.fq) 125.61 Gbp 48.74x 93.3 GiB
PacBio HiFi (.bam) 571.21 Gbp 221.65x 424.1 GiB
Arima 170.96 Gbp 66.34x 93.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.58 Gbp.
Last upload on 15 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 21 February 2025
mArtLit1.hap1.cur.20250221.fasta.gz (653.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 180.62 Mbp 2 217.35 Mbp
20 4 116.16 Mbp 3 193.24 Mbp
30 6 101.11 Mbp 4 180.62 Mbp
40 9 70.48 Mbp 6 160.30 Mbp
50 13 60.70 Mbp 7 150.44 Mbp
60 17 52.15 Mbp 9 147.46 Mbp
70 23 39.55 Mbp 11 120.93 Mbp
80 31 22.54 Mbp 13 99.24 Mbp
90 0 0
100 0 0
0.897x 530 2.31 Gbp 486 2.31 Gbp
NG based on genome size 2.58 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 21 February 2025
mArtLit1.hap2.cur.20250221.fasta.gz (549.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 140.53 Mbp 2 215.88 Mbp
20 4 98.42 Mbp 3 194.99 Mbp
30 7 72.71 Mbp 4 181.85 Mbp
40 11 60.39 Mbp 6 164.09 Mbp
50 16 52.29 Mbp 7 152.73 Mbp
60 21 39.68 Mbp 9 130.25 Mbp
70 30 21.68 Mbp 11 110.18 Mbp
80 60 0.98 Mbp 17 1.89 Mbp
90 0 0
100 0 0
0.814x 366 2.10 Gbp 312 2.10 Gbp
NG based on genome size 2.58 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 February 2024
mArtLit1.MT.20240228.fasta.gz (5.3 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mArtLit1_hap1.yml (view)
species: Artibeus lituratus
specimen: mArtLit1
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap1
hap1: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/mArtLit1.HiC.hap1.20230911.fasta.gz
hap2: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/mArtLit1.HiC.hap2.20230911.fasta.gz
pretext_hap1: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mArtLit1_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mArtLit1_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/evaluation/merqury/mArtLit1_png/
pacbio_read_dir: s3://genomeark/species/Artibeus_lituratus/mArtLit1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Artibeus_lituratus/mArtLit1/genomic_data/arima/
mito: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_MT_rockefeller/mArtLit1.MT.20240228.fasta.gz
pipeline: 
  - hifiasm (0.16.1+galaxy4)
  - yahs (1.2a.2+galaxy0)
notes: This was a Hifiasm-HiC assembly of mArtLit1, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was Swift-IDT. 
assembly_vgp_HiC_2.0/mArtLit1_hap2.yml (view)
species: Artibeus lituratus
specimen: mArtLit1
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap2
hap1: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/mArtLit1.HiC.hap1.20230911.fasta.gz
hap2: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/mArtLit1.HiC.hap2.20230911.fasta.gz
pretext_hap1: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mArtLit1_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mArtLit1_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_vgp_HiC_2.0/evaluation/merqury/mArtLit1_png/
pacbio_read_dir: s3://genomeark/species/Artibeus_lituratus/mArtLit1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Artibeus_lituratus/mArtLit1/genomic_data/arima/
mito: s3://genomeark/species/Artibeus_lituratus/mArtLit1/assembly_MT_rockefeller/mArtLit1.MT.20240228.fasta.gz
pipeline: 
  - hifiasm (0.16.1+galaxy4)
  - yahs (1.2a.2+galaxy0)
notes: This was a Hifiasm-HiC assembly of mArtLit1, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was Swift-IDT. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.