Ia io

great evening bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mIaxIox
  name: Ia io
  taxon_id: 360967
  common_name: great evening bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mIaxIox1
  genome_size: 2288520000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mIaxIox2 82.50 Gbp 36.05x 71.2 GiB
PacBio HiFi (.bam) mIaxIox2 82.77 Gbp 36.17x 297.1 GiB
Arima mIaxIox2 157.03 Gbp 68.61x 64.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 18 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mIaxIox2 PacBio HiFi (.fq) 82.50 Gbp 36.05x 71.2 GiB
PacBio HiFi (.bam) 82.77 Gbp 36.17x 297.1 GiB
Arima 157.03 Gbp 68.61x 64.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 18 February 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 26 February 2024
mIaxIox2.HiC.hap1.20240226.fasta.gz (586.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 68.69 Mbp 2 121.39 Mbp
20 7 59.18 Mbp 4 116.34 Mbp
30 11 50.52 Mbp 6 112.29 Mbp
40 17 35.07 Mbp 8 105.35 Mbp
50 26 20.11 Mbp 11 95.89 Mbp
60 38 16.61 Mbp 13 88.08 Mbp
70 60 6.98 Mbp 16 67.09 Mbp
80 109 3.37 Mbp 20 53.57 Mbp
90 275 0.56 Mbp 58 1.60 Mbp
100 0 0
0.932x 811 2.13 Gbp 456 2.13 Gbp
NG based on genome size 2.29 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 26 February 2024
mIaxIox2.HiC.hap2.20240226.fasta.gz (633.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 63.86 Mbp 2 124.86 Mbp
20 8 49.24 Mbp 4 120.24 Mbp
30 13 43.57 Mbp 6 113.44 Mbp
40 18 36.62 Mbp 8 105.33 Mbp
50 25 30.01 Mbp 11 95.49 Mbp
60 34 20.11 Mbp 13 90.30 Mbp
70 48 12.03 Mbp 16 72.22 Mbp
80 74 6.03 Mbp 20 58.78 Mbp
90 127 2.92 Mbp 24 31.41 Mbp
100 401 171.03 Kbp 99 426.19 Kbp
1.007x 597 2.30 Gbp 231 2.30 Gbp
NG based on genome size 2.29 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 26 February 2024
mIaxIox2.MT.20240226.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.