Molossus nigricans

northern black mastiff bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMolNig
  name: Molossus nigricans
  taxon_id: 2997257
  common_name: northern black mastiff bat
  order:
    name: Chiroptera
  family:
    name: Molossidae
  individuals:
    - short_name: mMolNig1
  genome_size: 2508570000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mMolNig1 128.25 Gbp 51.13x 93.0 GiB
Arima mMolNig1 119.93 Gbp 47.81x 67.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.51 Gbp.
Last upload on 28 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMolNig1 PacBio HiFi (.fq) 128.25 Gbp 51.13x 93.0 GiB
Arima 119.93 Gbp 47.81x 67.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.51 Gbp.
Last upload on 28 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 2 April 2024
mMolNig1.hap1.cur.20240402.fasta.gz (658.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 131.59 Mbp 1 290.66 Mbp
20 5 99.15 Mbp 3 138.85 Mbp
30 7 96.97 Mbp 5 121.09 Mbp
40 10 81.60 Mbp 7 119.95 Mbp
50 13 75.15 Mbp 9 114.34 Mbp
60 17 60.63 Mbp 11 111.88 Mbp
70 22 42.52 Mbp 14 100.15 Mbp
80 30 25.53 Mbp 17 74.73 Mbp
90 46 10.24 Mbp 20 58.91 Mbp
100 140 0.88 Mbp 50 1.26 Mbp
1.023x 478 2.57 Gbp 365 2.57 Gbp
NG based on genome size 2.51 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 2 April 2024
mMolNig1.hap2.cur.20240402.fasta.gz (618.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 115.40 Mbp 1 285.73 Mbp
20 5 108.27 Mbp 3 131.05 Mbp
30 7 94.65 Mbp 5 119.78 Mbp
40 10 82.77 Mbp 7 116.04 Mbp
50 13 73.22 Mbp 10 112.11 Mbp
60 17 55.81 Mbp 12 101.39 Mbp
70 23 38.13 Mbp 14 86.62 Mbp
80 32 23.66 Mbp 18 69.41 Mbp
90 60 3.34 Mbp 23 29.35 Mbp
100 0 0
0.955x 362 2.39 Gbp 282 2.39 Gbp
NG based on genome size 2.51 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 13 September 2023
mMolNig1.MT.20230913.fasta.gz (5.3 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mMolNig1_hap1.yml (view)
species: Molossus nigricans
specimen: mMolNig1
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap1
hap1: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/mMolNig1.HiC.hap1.20230906.fasta.gz
hap2: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/mMolNig1.HiC.hap2.20230906.fasta.gz
pretext_hap1: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mMolNig1_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mMolNig1_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/evaluation/merqury/mMolNig1_png/
pacbio_read_dir: s3://genomeark/species/Molossus_nigricans/mMolNig1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Molossus_nigricans/mMolNig1/genomic_data/arima/
mito: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_MT_rockefeller/mMolNig1.MT.20230913.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mMolNig1, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was TruSeq. 
assembly_vgp_HiC_2.0/mMolNig1_hap2.yml (view)
species: Molossus nigricans
specimen: mMolNig1
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap2
hap1: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/mMolNig1.HiC.hap1.20230906.fasta.gz
hap2: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/mMolNig1.HiC.hap2.20230906.fasta.gz
pretext_hap1: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mMolNig1_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mMolNig1_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_vgp_HiC_2.0/evaluation/merqury/mMolNig1_png/
pacbio_read_dir: s3://genomeark/species/Molossus_nigricans/mMolNig1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Molossus_nigricans/mMolNig1/genomic_data/arima/
mito: s3://genomeark/species/Molossus_nigricans/mMolNig1/assembly_MT_rockefeller/mMolNig1.MT.20230913.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mMolNig1, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was TruSeq. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.