Myotis emarginatus

Geoffroy's bat

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMyoEma
  name: Myotis emarginatus
  taxon_id: 109480
  common_name: Geoffroy's bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mMyoEma1
      biosample_id: SAMEA115534660
      sex: female
  genome_size: 2210280000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMyoEma1 79.34 Gbp 35.90x 28.6 GiB
Arima mMyoEma1 160.98 Gbp 72.83x 46.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 22 October 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMyoEma1 PacBio HiFi (.bam) 79.34 Gbp 35.90x 28.6 GiB
Arima 160.98 Gbp 72.83x 46.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 22 October 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 9 April 2025
mMyoEma1.hap1.cur.20250409.fasta.gz (592.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 80.01 Mbp 1 228.73 Mbp
20 6 64.60 Mbp 2 217.92 Mbp
30 10 53.41 Mbp 3 217.38 Mbp
40 14 51.23 Mbp 5 116.24 Mbp
50 19 35.92 Mbp 7 99.61 Mbp
60 26 26.99 Mbp 10 86.54 Mbp
70 36 15.94 Mbp 12 82.15 Mbp
80 58 6.54 Mbp 16 59.17 Mbp
90 132 1.48 Mbp 20 28.21 Mbp
100 0 0
0.955x 532 2.11 Gbp 306 2.11 Gbp
NG based on genome size 2.21 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 9 April 2025
mMyoEma1.hap2.cur.20250409.fasta.gz (585.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 84.19 Mbp 1 229.98 Mbp
20 6 57.06 Mbp 2 213.61 Mbp
30 10 52.39 Mbp 4 124.37 Mbp
40 14 46.34 Mbp 5 115.11 Mbp
50 20 33.59 Mbp 8 96.53 Mbp
60 28 25.52 Mbp 10 80.90 Mbp
70 38 18.59 Mbp 13 67.51 Mbp
80 64 4.02 Mbp 16 55.74 Mbp
90 181 0.77 Mbp 26 2.84 Mbp
100 0 0
0.943x 682 2.08 Gbp 418 2.08 Gbp
NG based on genome size 2.21 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 October 2024
mMyoEma1.MT.20241022.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.