Myotis emarginatus

Geoffroy's bat

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMyoEma
  name: Myotis emarginatus
  taxon_id: 109480
  common_name: Geoffroy's bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mMyoEma1
      biosample_id: SAMEA115534660
      sex: female
  genome_size: 2210280000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMyoEma1 79.34 Gbp 35.90x 28.6 GiB
Arima mMyoEma1 160.98 Gbp 72.83x 46.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 22 October 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMyoEma1 PacBio HiFi (.bam) 79.34 Gbp 35.90x 28.6 GiB
Arima 160.98 Gbp 72.83x 46.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 22 October 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 22 October 2024
mMyoEma1.hap1.asm.20241022.fasta.gz (535.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 35 5.01 Mbp 1 229.80 Mbp
20 86 3.90 Mbp 2 215.81 Mbp
30 149 3.11 Mbp 4 127.20 Mbp
40 227 2.52 Mbp 5 111.39 Mbp
50 324 2.05 Mbp 8 95.50 Mbp
60 446 1.63 Mbp 10 81.91 Mbp
70 602 1.25 Mbp 13 67.87 Mbp
80 817 0.83 Mbp 16 55.77 Mbp
90 1179 403.38 Kbp 23 9.76 Mbp
100 0 0
0.955x 1938 2.11 Gbp 422 2.11 Gbp
NG based on genome size 2.21 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 22 October 2024
mMyoEma1.hap2.asm.20241022.fasta.gz (528.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 34 5.07 Mbp 1 224.07 Mbp
20 86 3.73 Mbp 3 208.76 Mbp
30 152 3.07 Mbp 4 125.83 Mbp
40 233 2.44 Mbp 6 108.34 Mbp
50 334 1.96 Mbp 8 91.52 Mbp
60 462 1.53 Mbp 10 81.05 Mbp
70 628 1.16 Mbp 13 66.69 Mbp
80 868 0.75 Mbp 17 52.20 Mbp
90 1312 296.31 Kbp 39 2.13 Mbp
100 0 0
0.941x 2138 2.08 Gbp 542 2.08 Gbp
NG based on genome size 2.21 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 October 2024
mMyoEma1.MT.20241022.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.