Myotis mystacinus

whiskered bat

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMyoMys
  name: Myotis mystacinus
  taxon_id: 109479
  common_name: whiskered bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mMyoMys1
      biosample_id: SAMEA114250307
      sex: male
  genome_size: 1887540000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMyoMys1 89.41 Gbp 47.37x 30.8 GiB
Arima mMyoMys1 130.42 Gbp 69.10x 36.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.89 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMyoMys1 PacBio HiFi (.bam) 89.41 Gbp 47.37x 30.8 GiB
Arima 130.42 Gbp 69.10x 36.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.89 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 30 May 2024
mMyoMys1.hap1.cur.20240530.fasta.gz (597.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 6.26 Mbp 1 232.65 Mbp
20 60 4.70 Mbp 2 217.84 Mbp
30 106 3.67 Mbp 3 217.54 Mbp
40 163 3.08 Mbp 4 119.67 Mbp
50 231 2.43 Mbp 6 109.45 Mbp
60 317 2.01 Mbp 8 94.93 Mbp
70 424 1.57 Mbp 10 85.28 Mbp
80 560 1.25 Mbp 12 79.58 Mbp
90 736 0.92 Mbp 15 61.64 Mbp
100 990 0.58 Mbp 18 53.77 Mbp
1.102x 2092 2.08 Gbp 526 2.08 Gbp
NG based on genome size 1.89 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 30 May 2024
mMyoMys1.hap2.cur.20240530.fasta.gz (557.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 6.71 Mbp 1 230.69 Mbp
20 58 4.64 Mbp 2 218.13 Mbp
30 105 3.54 Mbp 3 217.53 Mbp
40 164 2.95 Mbp 4 113.77 Mbp
50 236 2.34 Mbp 6 98.77 Mbp
60 328 1.83 Mbp 8 93.14 Mbp
70 444 1.42 Mbp 10 83.34 Mbp
80 595 1.11 Mbp 13 61.71 Mbp
90 803 0.74 Mbp 16 54.52 Mbp
100 1190 282.94 Kbp 21 18.19 Mbp
1.029x 1741 1.94 Gbp 327 1.94 Gbp
NG based on genome size 1.89 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 March 2024
mMyoMys1.MT.20240308.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.