Nyctalus leisleri

lesser noctule

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mNycLei
  name: Nyctalus leisleri
  taxon_id: 59465
  common_name: lesser noctule
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mNycLei1
      biosample_id: SAMEA114250308
      sex: male
  genome_size: 2288520000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mNycLei1 94.87 Gbp 41.46x 36.9 GiB
Arima mNycLei1 108.47 Gbp 47.40x 33.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 8 August 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mNycLei1 PacBio HiFi (.bam) 94.87 Gbp 41.46x 36.9 GiB
Arima 108.47 Gbp 47.40x 33.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 8 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 1 April 2025
mNycLei1.hap1.cur.20250401.fasta.gz (618.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 67.48 Mbp 1 231.33 Mbp
20 7 58.04 Mbp 3 206.95 Mbp
30 12 46.08 Mbp 4 117.72 Mbp
40 17 42.90 Mbp 6 106.77 Mbp
50 24 25.90 Mbp 8 95.32 Mbp
60 35 15.91 Mbp 11 79.18 Mbp
70 55 7.96 Mbp 14 57.73 Mbp
80 102 3.22 Mbp 18 52.48 Mbp
90 220 1.06 Mbp 48 2.23 Mbp
100 0 0
0.973x 887 2.23 Gbp 585 2.23 Gbp
NG based on genome size 2.29 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 1 April 2025
mNycLei1.hap2.cur.20250401.fasta.gz (563.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 65.84 Mbp 2 203.74 Mbp
20 7 58.09 Mbp 3 200.94 Mbp
30 12 48.08 Mbp 4 110.86 Mbp
40 18 32.41 Mbp 6 92.00 Mbp
50 26 22.52 Mbp 9 79.54 Mbp
60 39 13.63 Mbp 12 61.50 Mbp
70 70 4.69 Mbp 16 52.47 Mbp
80 160 1.27 Mbp 33 2.96 Mbp
90 0 0
100 0 0
0.883x 920 2.02 Gbp 673 2.02 Gbp
NG based on genome size 2.29 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 6 August 2024
mNycLei1.MT.20240806.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.