Rhinolophus blasii

Blasius' horseshoe bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mRhiBla
  name: Rhinolophus blasii
  taxon_id: 519037
  common_name: Blasius' horseshoe bat
  order:
    name: Chiroptera
  family:
    name: Rhinolophidae
  individuals:
    - short_name: mRhiBla1
  genome_size: 2102700000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
  
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mRhiBla1 73.14 Gbp 34.78x 55.0 GiB
PacBio HiFi (.bam) mRhiBla1 73.37 Gbp 34.89x 258.5 GiB
Arima mRhiBla1 119.58 Gbp 56.87x 50.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.10 Gbp.
Last upload on 18 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mRhiBla1 PacBio HiFi (.fq) 73.14 Gbp 34.78x 55.0 GiB
PacBio HiFi (.bam) 73.37 Gbp 34.89x 258.5 GiB
Arima 119.58 Gbp 56.87x 50.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.10 Gbp.
Last upload on 18 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 22 February 2024
mRhiBla1.HiC.hap1.20240222.fasta.gz (580.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 99.40 Mbp 1 228.18 Mbp
20 5 72.75 Mbp 3 111.00 Mbp
30 8 59.10 Mbp 5 108.02 Mbp
40 13 46.08 Mbp 7 101.94 Mbp
50 17 40.69 Mbp 9 100.49 Mbp
60 24 29.27 Mbp 11 92.95 Mbp
70 31 24.47 Mbp 13 73.50 Mbp
80 42 16.62 Mbp 17 60.22 Mbp
90 63 5.54 Mbp 20 46.08 Mbp
100 0 0
0.946x 302 1.99 Gbp 220 1.99 Gbp
NG based on genome size 2.10 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 22 February 2024
mRhiBla1.HiC.hap2.20240222.fasta.gz (614.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 72.09 Mbp 2 110.58 Mbp
20 6 60.38 Mbp 4 108.05 Mbp
30 9 55.71 Mbp 6 104.19 Mbp
40 14 48.96 Mbp 8 100.86 Mbp
50 18 40.79 Mbp 10 94.69 Mbp
60 24 32.76 Mbp 12 88.73 Mbp
70 31 24.65 Mbp 15 73.42 Mbp
80 42 13.50 Mbp 18 62.85 Mbp
90 63 7.69 Mbp 22 46.03 Mbp
100 201 93.06 Kbp 101 93.06 Kbp
1.002x 289 2.11 Gbp 188 2.11 Gbp
NG based on genome size 2.10 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 26 February 2024
mRhiBla1.MT.20240226.fasta.gz (5.4 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mRhiBla1.yml (view)
species: Rhinolophus blasii
specimen: mRhiBla1
projects: 
  - vgp
  - bat1k
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
primary: s3://genomeark/species/Rhinolophus_blasii/mRhiBla1/assembly_vgp_HiC_2.0/mRhiBla1.HiC.hap1.20240222.fasta.gz
haplotigs: s3://genomeark/species/Rhinolophus_blasii/mRhiBla1/assembly_vgp_HiC_2.0/mRhiBla1.HiC.hap2.20240222.fasta.gz
pretext: s3://genomeark/species/Rhinolophus_blasii/mRhiBla1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mRhiBla1_hap1_s2.pretext
pretext: s3://genomeark/species/Rhinolophus_blasii/mRhiBla1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mRhiBla1_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Rhinolophus_blasii/mRhiBla1/assembly_vgp_HiC_2.0/evaluation/merqury/mRhiBla1_png/
pacbio_read_dir: s3://genomeark/species/Rhinolophus_blasii/mRhiBla1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Rhinolophus_blasii/mRhiBla1/genomic_data/arima/
mito: s3://genomeark/species/Rhinolophus_blasii/mRhiBla1/assembly_MT_rockefeller/mRhiBla1.MT.20240226.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mRhiBla1. This hap1 assembly and hap2 assembly underwent separate HiC scaffolding with YaHS. The HiC prep kit used was Swift-IDT. The HiC reaction was using Arima kit v2.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.