Rhinolophus hipposideros

lesser horseshoe bat

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mRhiHip
  name: Rhinolophus hipposideros
  taxon_id: 77218
  common_name: lesser horseshoe bat
  order:
    name: Chiroptera
  family:
    name: Rhinolophidae
  individuals:
    - short_name: mRhiHip2
      biosample_id: SAMEA113980802
      sex: female
  genome_size: 1877760000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mRhiHip2 82.74 Gbp 44.06x 28.2 GiB
Arima mRhiHip2 159.69 Gbp 85.04x 44.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.88 Gbp.
Last upload on 1 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mRhiHip2 PacBio HiFi (.bam) 82.74 Gbp 44.06x 28.2 GiB
Arima 159.69 Gbp 85.04x 44.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.88 Gbp.
Last upload on 1 May 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 9 April 2025
mRhiHip2.hap1.cur.20250409.fasta.gz (610.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 82.90 Mbp 2 111.71 Mbp
20 5 76.41 Mbp 4 109.58 Mbp
30 8 67.69 Mbp 5 107.74 Mbp
40 10 60.21 Mbp 7 101.59 Mbp
50 14 50.85 Mbp 9 96.07 Mbp
60 18 43.73 Mbp 11 89.98 Mbp
70 23 34.50 Mbp 13 77.73 Mbp
80 29 28.32 Mbp 16 67.69 Mbp
90 36 23.68 Mbp 19 58.39 Mbp
100 47 13.90 Mbp 23 45.84 Mbp
1.131x 653 2.12 Gbp 594 2.12 Gbp
NG based on genome size 1.88 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 9 April 2025
mRhiHip2.hap2.cur.20250409.fasta.gz (632.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 109.30 Mbp 2 111.62 Mbp
20 4 97.59 Mbp 4 109.30 Mbp
30 6 78.08 Mbp 5 107.83 Mbp
40 9 68.27 Mbp 7 101.72 Mbp
50 12 51.72 Mbp 9 96.13 Mbp
60 16 44.95 Mbp 11 89.07 Mbp
70 20 38.04 Mbp 14 75.66 Mbp
80 26 31.88 Mbp 16 68.27 Mbp
90 32 27.30 Mbp 19 58.65 Mbp
100 40 17.01 Mbp 23 45.98 Mbp
1.193x 1036 2.24 Gbp 980 2.24 Gbp
NG based on genome size 1.88 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 2 May 2024
mRhiHip2.MT.20240502.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.