Vespertilio murinus

particolored bat

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mVesMur
  name: Vespertilio murinus
  taxon_id: 59485
  common_name: particolored bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mVesMur1
      biosample_id: SAMEA112247422
      sex:
  genome_size: 2288520000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mVesMur1 89.44 Gbp 39.08x 36.8 GiB
Arima mVesMur1 121.53 Gbp 53.11x 37.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 19 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mVesMur1 PacBio HiFi (.bam) 89.44 Gbp 39.08x 36.8 GiB
Arima 121.53 Gbp 53.11x 37.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 19 December 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 January 2024
mVesMur1.pri.cur.20240126.fasta.gz (549.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 7.68 Mbp 2 202.11 Mbp
20 60 5.50 Mbp 3 201.28 Mbp
30 106 4.60 Mbp 4 196.85 Mbp
40 164 3.55 Mbp 5 186.29 Mbp
50 238 2.65 Mbp 6 172.14 Mbp
60 337 1.97 Mbp 9 74.91 Mbp
70 476 1.35 Mbp 12 55.96 Mbp
80 728 0.55 Mbp 17 27.46 Mbp
90 0 0
100 0 0
0.841x 1158 1.93 Gbp 178 1.93 Gbp
NG based on genome size 2.29 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 January 2024
mVesMur1.alt.cur.20240126.fasta.gz (547.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 69 2.62 Mbp 69 2.62 Mbp
20 174 1.85 Mbp 174 1.85 Mbp
30 316 1.43 Mbp 316 1.43 Mbp
40 500 1.11 Mbp 500 1.11 Mbp
50 735 0.85 Mbp 735 0.85 Mbp
60 1047 0.63 Mbp 1047 0.63 Mbp
70 1503 387.18 Kbp 1503 387.18 Kbp
80 2604 94.99 Kbp 2604 94.99 Kbp
90 0 0
100 0 0
0.840x 5087 1.92 Gbp 5087 1.92 Gbp
NG based on genome size 2.29 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 8 April 2025
mVesMur1.hap1.cur.20250408.fasta.gz (557.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 92.44 Mbp 2 202.19 Mbp
20 6 77.56 Mbp 3 201.50 Mbp
30 9 73.36 Mbp 4 197.86 Mbp
40 13 51.38 Mbp 5 187.16 Mbp
50 17 44.50 Mbp 6 171.73 Mbp
60 24 26.37 Mbp 8 86.92 Mbp
70 38 9.69 Mbp 12 56.10 Mbp
80 83 2.40 Mbp 16 41.70 Mbp
90 0 0
100 0 0
0.858x 457 1.96 Gbp 268 1.96 Gbp
NG based on genome size 2.29 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 8 April 2025
mVesMur1.hap2.cur.20250408.fasta.gz (529.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 77.25 Mbp 2 202.33 Mbp
20 6 61.48 Mbp 3 200.97 Mbp
30 10 52.15 Mbp 4 196.43 Mbp
40 15 42.38 Mbp 5 186.63 Mbp
50 21 31.16 Mbp 6 171.38 Mbp
60 30 21.51 Mbp 9 73.92 Mbp
70 47 8.38 Mbp 13 50.06 Mbp
80 188 258.93 Kbp 75 326.10 Kbp
90 0 0
100 0 0
0.809x 395 1.85 Gbp 267 1.85 Gbp
NG based on genome size 2.29 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 December 2023
mVesMur1.MT.20231222.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.