Eptesicus furinalis

Argentine brown bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mEptFur
  name: Eptesicus furinalis
  taxon_id: 124746
  common_name: Argentine brown bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mEptFur1
  genome_size: 2474340000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mEptFur1 111.70 Gbp 45.14x 82.0 GiB
Dovetail Genomics mEptFur1 170.22 Gbp 68.79x 94.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.47 Gbp.
Last upload on 24 October 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mEptFur1 PacBio HiFi (.fq) 111.70 Gbp 45.14x 82.0 GiB
Dovetail Genomics 170.22 Gbp 68.79x 94.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.47 Gbp.
Last upload on 24 October 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 8 July 2025
mEptFur1.hap1.cur.20250708.fasta.gz (609.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 97.47 Mbp 2 122.76 Mbp
20 6 81.51 Mbp 4 118.54 Mbp
30 9 60.92 Mbp 7 113.03 Mbp
40 13 57.91 Mbp 9 107.85 Mbp
50 17 52.50 Mbp 11 101.05 Mbp
60 23 40.34 Mbp 14 86.24 Mbp
70 30 24.70 Mbp 17 65.77 Mbp
80 57 4.31 Mbp 21 54.26 Mbp
90 0 0
100 0 0
0.871x 309 2.16 Gbp 127 2.16 Gbp
NG based on genome size 2.47 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 8 July 2025
mEptFur1.hap2.cur.20250708.fasta.gz (556.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 98.33 Mbp 2 122.29 Mbp
20 5 91.22 Mbp 4 117.26 Mbp
30 8 81.99 Mbp 7 112.46 Mbp
40 12 63.68 Mbp 9 108.42 Mbp
50 16 55.54 Mbp 11 100.58 Mbp
60 21 35.78 Mbp 14 85.44 Mbp
70 31 18.73 Mbp 17 62.93 Mbp
80 64 3.22 Mbp 21 54.28 Mbp
90 0 0
100 0 0
0.859x 266 2.12 Gbp 86 2.12 Gbp
NG based on genome size 2.47 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 November 2023
mEptFur1.MT.20231103.fasta.gz (5.0 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mEptFur1.yml (view)
species: Eptesicus furinalis 
specimen: mEptFur1 
projects:  
  - vgp 
  - bat1k 
assembled_by_group: Rockefeller 
data_location: S3 
release_to: S3 
primary: s3://genomeark/species/Eptesicus_furinalis/mEptFur1/assembly_vgp_HiC_2.0/mEptFur1.HiC.hap1.20231103.fasta.gz 
haplotigs: s3://genomeark/species/Eptesicus_furinalis/mEptFur1/assembly_vgp_HiC_2.0/mEptFur1.HiC.hap2.20231103.fasta.gz 
pretext: s3://genomeark/species/Eptesicus_furinalis/mEptFur1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mEptFur1_hap1_s2.pretext 
pretext: s3://genomeark/species/Eptesicus_furinalis/mEptFur1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mEptFur1_hap2_s2.pretext 
kmer_spectra_img: s3://genomeark/species/Eptesicus_furinalis/mEptFur1/assembly_vgp_HiC_2.0/evaluation/merqury/mEptFur1_png/ 
pacbio_read_dir: s3://genomeark/species/Eptesicus_furinalis/mEptFur1/genomic_data/pacbio_hifi/ 
pacbio_read_type: hifi 
hic_read_dir: s3://genomeark/species/Eptesicus_furinalis/mEptFur1/genomic_data/dovetail/ 
pipeline:  
  - hifiasm (0.19.3+galaxy0) 
  - yahs (1.2a.2+galaxy1) 
notes: This was a Hifiasm-HiC assembly of mEptFur1. This hap1 assembly and hap2 assembly underwent separate HiC scaffolding with YaHS. The HiC prep kit used was Swift-IDT. The HiC reaction was using Dovetail OmniC. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.