Micronycteris microtis

common big-eared bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMicMic
  name: Micronycteris microtis
  taxon_id: 249008
  common_name: common big-eared bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
    - short_name: mMicMic1
  genome_size: 2229840000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mMicMic1 80.66 Gbp 36.17x 60.8 GiB
PacBio HiFi (.bam) mMicMic1 80.49 Gbp 36.09x 279.1 GiB
Arima mMicMic1 130.72 Gbp 58.62x 69.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.23 Gbp.
Last upload on 1 July 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMicMic1 PacBio HiFi (.fq) 80.66 Gbp 36.17x 60.8 GiB
PacBio HiFi (.bam) 80.49 Gbp 36.09x 279.1 GiB
Arima 130.72 Gbp 58.62x 69.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.23 Gbp.
Last upload on 1 July 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 3 June 2025
mMicMic1.hap1.cur.20250603.fasta.gz (632.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 225.10 Mbp 1 241.78 Mbp
20 3 119.89 Mbp 2 238.03 Mbp
30 5 91.07 Mbp 3 220.70 Mbp
40 8 78.14 Mbp 5 148.12 Mbp
50 11 59.31 Mbp 6 134.00 Mbp
60 16 43.55 Mbp 8 119.52 Mbp
70 22 34.92 Mbp 10 94.27 Mbp
80 29 25.14 Mbp 13 56.60 Mbp
90 41 12.18 Mbp 17 45.79 Mbp
100 0 0
0.969x 257 2.16 Gbp 189 2.16 Gbp
NG based on genome size 2.23 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 3 June 2025
mMicMic1.hap2.cur.20250603.fasta.gz (551.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 140.25 Mbp 1 244.51 Mbp
20 4 117.75 Mbp 2 237.95 Mbp
30 6 81.45 Mbp 3 220.72 Mbp
40 9 66.44 Mbp 4 190.06 Mbp
50 12 57.64 Mbp 6 134.15 Mbp
60 17 42.41 Mbp 8 97.09 Mbp
70 24 27.10 Mbp 10 89.49 Mbp
80 33 19.19 Mbp 14 48.90 Mbp
90 71 0.85 Mbp 20 3.43 Mbp
100 0 0
0.908x 222 2.03 Gbp 158 2.03 Gbp
NG based on genome size 2.23 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 November 2023
mMicMic1.MT.20231103.fasta.gz (4.9 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mMicMic1.yml (view)
species: Micronycteris microtis 
specimen: mMicMic1 
projects:  
  - vgp 
  - bat1k 
assembled_by_group: Rockefeller 
data_location: S3 
release_to: S3 
primary: s3://genomeark/species/Micronycteris_microtis/mMicMic1/assembly_vgp_HiC_2.0/mMicMic1.HiC.hap1.20231103.fasta.gz 
haplotigs: s3://genomeark/species/Micronycteris_microtis/mMicMic1/assembly_vgp_HiC_2.0/mMicMic1.HiC.hap2.20231103.fasta.gz 
pretext: s3://genomeark/species/Micronycteris_microtis/mMicMic1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mMicMic1_hap1_s2.pretext 
pretext: s3://genomeark/species/Micronycteris_microtis/mMicMic1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mMicMic1_hap2_s2.pretext 
kmer_spectra_img: s3://genomeark/species/Micronycteris_microtis/mMicMic1/assembly_vgp_HiC_2.0/evaluation/merqury/mMicMic1_png/ 
pacbio_read_dir: s3://genomeark/species/Micronycteris_microtis/mMicMic1/genomic_data/pacbio_hifi/ 
pacbio_read_type: hifi 
hic_read_dir: s3://genomeark/species/Micronycteris_microtis/mMicMic1/genomic_data/dovetail/ 
mito: s3://genomeark/species/Micronycteris_microtis/mMicMic1/assembly_MT_rockefeller/mMicMic1.MT.20231103.fasta.gz 
pipeline:  
  - hifiasm (0.19.3+galaxy0) 
  - yahs (1.2a.2+galaxy1) 
notes: This was a Hifiasm-HiC assembly of mMicMic1. This hap1 assembly and hap2 assembly underwent separate HiC scaffolding with YaHS. The HiC prep kit used was Swift-IDT. The HiC reaction was using Dovetail OmniC. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.