Pipistrellus nathusii

Nathusius's pipistrelle

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mPipNat
  name: Pipistrellus nathusii
  taxon_id: 59473
  common_name: Nathusius's pipistrelle
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mPipNat1
      biosample_id: SAMEA115534661
      sex: female
  genome_size: 2122260000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mPipNat1 89.83 Gbp 42.33x 30.7 GiB
Arima mPipNat1 241.70 Gbp 113.89x 69.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.12 Gbp.
Last upload on 22 October 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPipNat1 PacBio HiFi (.bam) 89.83 Gbp 42.33x 30.7 GiB
Arima 241.70 Gbp 113.89x 69.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.12 Gbp.
Last upload on 22 October 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 3 May 2025
mPipNat1.hap1.cur.20250503.fasta.gz (538.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 67.64 Mbp 2 196.81 Mbp
20 7 50.22 Mbp 3 193.32 Mbp
30 12 43.58 Mbp 4 108.69 Mbp
40 17 29.18 Mbp 6 104.51 Mbp
50 26 21.23 Mbp 8 87.16 Mbp
60 37 16.58 Mbp 11 71.96 Mbp
70 54 8.50 Mbp 14 54.45 Mbp
80 101 2.54 Mbp 18 48.34 Mbp
90 297 425.06 Kbp 77 0.75 Mbp
100 0 0
0.924x 704 1.96 Gbp 397 1.96 Gbp
NG based on genome size 2.12 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 3 May 2025
mPipNat1.hap2.cur.20250503.fasta.gz (530.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 69.61 Mbp 2 195.82 Mbp
20 7 46.37 Mbp 3 191.69 Mbp
30 13 39.22 Mbp 4 104.03 Mbp
40 18 32.76 Mbp 6 96.33 Mbp
50 26 22.60 Mbp 8 87.06 Mbp
60 38 15.36 Mbp 11 72.15 Mbp
70 60 6.53 Mbp 14 54.87 Mbp
80 124 1.81 Mbp 19 43.24 Mbp
90 0 0
100 0 0
0.890x 759 1.89 Gbp 453 1.89 Gbp
NG based on genome size 2.12 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 October 2024
mPipNat1.MT.20241022.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.