Pipistrellus pygmaeus

soprano pipistrelle

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mPipPyg2: GCA_949987585.1 mPipPyg2: GCA_949987765.1
ENA mPipPyg2: GCA_949987585.1 mPipPyg2: GCA_949987765.1
UCSC Genome Browser mPipPyg2: GCA_949987585.1 mPipPyg2: GCA_949987765.1

metadata.yaml (view) (edit on github)
species:
  short_name: mPipPyg
  name: Pipistrellus pygmaeus
  taxon_id: 246814
  common_name: soprano pipistrelle
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mPipPyg2
      biosample_id: SAMEA9921456
      sex: male
  genome_size: 2122260000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mPipPyg2 118.14 Gbp 55.67x 201.6 GiB
Arima mPipPyg2 210.53 Gbp 99.20x 63.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.12 Gbp.
Last upload on 19 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPipPyg2 PacBio HiFi (.bam) 118.14 Gbp 55.67x 201.6 GiB
Arima 210.53 Gbp 99.20x 63.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.12 Gbp.
Last upload on 19 June 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 16 August 2023
mPipPyg2.pri.cur.20230816.fasta.gz (531.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 95.24 Mbp 1 212.68 Mbp
20 5 70.02 Mbp 3 194.78 Mbp
30 8 61.92 Mbp 4 106.54 Mbp
40 12 55.55 Mbp 6 100.97 Mbp
50 16 48.71 Mbp 8 89.07 Mbp
60 21 32.76 Mbp 11 75.91 Mbp
70 29 18.51 Mbp 14 55.71 Mbp
80 54 4.90 Mbp 18 49.78 Mbp
90 0 0
100 0 0
0.893x 404 1.90 Gbp 243 1.90 Gbp
NG based on genome size 2.12 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 16 August 2023
mPipPyg2.alt.cur.20230816.fasta.gz (499.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 48 3.41 Mbp 48 3.41 Mbp
20 118 2.67 Mbp 118 2.67 Mbp
30 210 2.07 Mbp 210 2.07 Mbp
40 327 1.61 Mbp 327 1.61 Mbp
50 478 1.23 Mbp 478 1.23 Mbp
60 682 0.88 Mbp 682 0.88 Mbp
70 978 0.58 Mbp 978 0.58 Mbp
80 1555 198.21 Kbp 1555 198.21 Kbp
90 0 0
100 0 0
0.832x 2717 1.76 Gbp 2716 1.76 Gbp
NG based on genome size 2.12 Gbp.
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 8 April 2025
mPipPyg2.hap1.cur.20250408.fasta.gz (534.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 78.94 Mbp 1 212.92 Mbp
20 6 75.82 Mbp 3 193.37 Mbp
30 9 66.76 Mbp 4 105.21 Mbp
40 12 59.69 Mbp 6 101.22 Mbp
50 16 49.71 Mbp 8 87.17 Mbp
60 21 35.98 Mbp 11 77.14 Mbp
70 28 21.12 Mbp 14 57.36 Mbp
80 45 5.77 Mbp 18 50.65 Mbp
90 0 0
100 0 0
0.895x 450 1.90 Gbp 328 1.90 Gbp
NG based on genome size 2.12 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 8 April 2025
mPipPyg2.hap2.cur.20250408.fasta.gz (504.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 80.18 Mbp 2 198.93 Mbp
20 6 75.35 Mbp 3 193.07 Mbp
30 8 73.53 Mbp 4 104.29 Mbp
40 12 52.22 Mbp 6 88.02 Mbp
50 16 48.41 Mbp 8 85.71 Mbp
60 21 34.78 Mbp 11 72.46 Mbp
70 31 14.61 Mbp 15 51.63 Mbp
80 68 2.07 Mbp 20 18.15 Mbp
90 0 0
100 0 0
0.849x 369 1.80 Gbp 282 1.80 Gbp
NG based on genome size 2.12 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 23 March 2023
mPipPyg2.MT.20230323.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.