Rhinolophus clivosus
Geoffroy's horseshoe bat
Included in the VGP and BAT1K.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | mRhiCli1 | 28.32 Gbp | 13.47x | 101.9 GiB | |
PacBio HiFi (.bam) | mRhiCli1 | 112.98 Gbp | 53.73x | 406.6 GiB | |
Arima | mRhiCli1 | 138.24 Gbp | 65.74x | 56.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.10 Gbp.
Last upload on 31 January 2024.
Coverage based on genome size 2.10 Gbp.
Last upload on 31 January 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mRhiCli1 | PacBio HiFi (.fq) | 28.32 Gbp | 13.47x | 101.9 GiB | |
PacBio HiFi (.bam) | 112.98 Gbp | 53.73x | 406.6 GiB | ||
Arima | 138.24 Gbp | 65.74x | 56.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.10 Gbp.
Last upload on 31 January 2024.
Coverage based on genome size 2.10 Gbp.
Last upload on 31 January 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 14 February 2024
mRhiCli1.HiC.hap1.20240214.fasta.gz (647.7 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 14 February 2024
mRhiCli1.HiC.hap1.20240214.fasta.gz (647.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 105.56 Mbp | 2 | 127.25 Mbp |
20 | 5 | 100.92 Mbp | 4 | 119.95 Mbp |
30 | 7 | 83.61 Mbp | 6 | 111.44 Mbp |
40 | 10 | 78.36 Mbp | 8 | 103.02 Mbp |
50 | 13 | 68.12 Mbp | 10 | 100.92 Mbp |
60 | 17 | 57.68 Mbp | 12 | 93.74 Mbp |
70 | 21 | 45.25 Mbp | 15 | 75.23 Mbp |
80 | 27 | 31.45 Mbp | 18 | 64.26 Mbp |
90 | 37 | 16.11 Mbp | 23 | 31.45 Mbp |
100 | 296 | 13.91 Kbp | 268 | 13.91 Kbp |
1.000x | 296 | 2.25 Gbp | 268 | 2.25 Gbp |
NG based on genome size 2.10 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 14 February 2024
mRhiCli1.HiC.hap2.20240214.fasta.gz (605.4 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 14 February 2024
mRhiCli1.HiC.hap2.20240214.fasta.gz (605.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 107.70 Mbp | 1 | 0.58 Gbp |
20 | 4 | 102.29 Mbp | 1 | 0.58 Gbp |
30 | 7 | 83.60 Mbp | 2 | 183.41 Mbp |
40 | 9 | 81.11 Mbp | 3 | 113.59 Mbp |
50 | 12 | 68.80 Mbp | 5 | 111.77 Mbp |
60 | 15 | 63.58 Mbp | 7 | 103.53 Mbp |
70 | 19 | 53.45 Mbp | 9 | 102.29 Mbp |
80 | 24 | 39.95 Mbp | 11 | 84.43 Mbp |
90 | 31 | 22.78 Mbp | 14 | 64.03 Mbp |
100 | 243 | 16.87 Kbp | 212 | 16.87 Kbp |
1.000x | 243 | 2.10 Gbp | 212 | 2.10 Gbp |
NG based on genome size 2.10 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 14 February 2024
mRhiCli1.MT.20240214.fasta.gz (5.1 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 14 February 2024
mRhiCli1.MT.20240214.fasta.gz (5.1 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.