Acipenser ruthenus

sterlet

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Maternal Assembly Paternal Assembly
GenBank fAciRut3: GCA_902713425.2 fAciRut3: GCA_902713435.2
ENA fAciRut3: GCA_902713425.2 fAciRut3: GCA_902713435.2
UCSC Genome Browser fAciRut3: GCA_902713425.2 fAciRut3: GCA_902713435.2

metadata.yaml (view) (edit on github)
species:
  short_name: fAciRut
  name: Acipenser ruthenus
  taxon_id: 7906
  common_name: sterlet
  order:
    name: Acipenseriformes
  family:
    name: Acipenseridae
  individuals:
    - short_name: fAciRut1
      biosample_id: SAMEA5572860
      sex: female
    - short_name: fAciRut2
      biosample_id: SAMEA5572861
      sex: male
    - short_name: fAciRut3
      biosample_id: SAMEA5572864
      mother: fAciRut1
      father: fAciRut2
  genome_size: 
  genome_size_method:
  project: [ vgp ]
CC BY 2.0 Tauralbus (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) fAciRut3 359.00 Gbp N/A 636.5 GiB
PacBio HiFi (.bam) fAciRut3 109.39 Gbp N/A 74.5 GiB
10x fAciRut3 245.95 Gbp N/A 158.8 GiB
Bionano fAciRut3 N/A N/A 2.8 GiB
Dovetail Genomics fAciRut3 242.06 Gbp N/A 160.5 GiB
Illumina fAciRut1 98.64 Gbp N/A 65.6 GiB
fAciRut2 110.74 Gbp N/A 71.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAciRut1 Illumina 98.64 Gbp N/A 65.6 GiB
fAciRut2 Illumina 110.74 Gbp N/A 71.3 GiB
fAciRut3 PacBio HiFi (subreads) 359.00 Gbp N/A 636.5 GiB
PacBio HiFi (.bam) 109.39 Gbp N/A 74.5 GiB
10x 245.95 Gbp N/A 158.8 GiB
Bionano N/A N/A 2.8 GiB
Dovetail Genomics 242.06 Gbp N/A 160.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 3 May 2022.
Assemblies
Individual 3 Maternal Assembly
Version assembly_curated from 4 December 2019
fAciRut3.mat.cur.20191204.fasta.gz (466.5 MiB)

Quality: 10.4 errors/Mb (QV=49.83)

Contigs Scaffolds
NG LG Len LG Len
10 5 22.50 Mbp 1 105.01 Mbp
20 13 20.03 Mbp 3 87.32 Mbp
30 22 15.87 Mbp 4 87.19 Mbp
40 33 12.96 Mbp 7 59.37 Mbp
50 47 10.83 Mbp 10 43.12 Mbp
60 64 8.19 Mbp 14 35.49 Mbp
70 89 5.35 Mbp 19 29.75 Mbp
80 129 3.24 Mbp 25 26.79 Mbp
90 199 1.58 Mbp 36 9.03 Mbp
100 646 5.93 Kbp 244 14.14 Kbp
1.000x 647 1.64 Gbp 245 1.64 Gbp
NG based on genome size .
Individual 3 Paternal Assembly
Version assembly_curated from 4 December 2019
fAciRut3.pat.cur.20191204.fasta.gz (473.3 MiB)

Quality: 9.5 errors/Mb (QV=50.22)

Contigs Scaffolds
NG LG Len LG Len
10 5 26.11 Mbp 1 104.95 Mbp
20 12 21.82 Mbp 3 88.35 Mbp
30 21 16.55 Mbp 5 83.15 Mbp
40 31 14.23 Mbp 7 59.13 Mbp
50 44 11.50 Mbp 10 42.54 Mbp
60 60 8.85 Mbp 15 33.22 Mbp
70 83 5.60 Mbp 20 30.48 Mbp
80 121 3.34 Mbp 26 22.95 Mbp
90 197 1.43 Mbp 37 10.71 Mbp
100 645 851 bp 223 16.39 Kbp
1.000x 646 1.66 Gbp 224 1.66 Gbp
NG based on genome size .
Individual 3 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fAciRut3.MT.20191002.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.