Acridotheres tristis

common_myna

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAcrTrip
  name: Acridotheres tristis
  taxon_id: 279927
  common_name: common_myna
  order:
    name: Passeriformes
  family:
    name: Sturnidae
  individuals:
    - short_name: bAcrTri1
      provider: Tali Magory Cohen
      sex: female
  genome_size: 1280000000
  genome_size_method: GoaT ancestral inferred
  project: [ vgp ]
CC BY-SA 3.0 Afsarnayakkan (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
Bases and Coverage are approximate.
Coverage based on genome size 1.28 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
Bases and Coverage are approximate.
Coverage based on genome size 1.28 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 18 March 2022
bAcrTri1.pri.cur.20220318.fasta.gz (325.0 MiB)

Quality: 64.8 errors/Mb (QV=41.89)

Contigs Scaffolds
NG LG Len LG Len
10 5 18.95 Mbp 0 156.25 Mbp
20 12 15.06 Mbp 1 118.31 Mbp
30 22 12.76 Mbp 2 117.45 Mbp
40 33 9.62 Mbp 4 77.30 Mbp
50 49 6.99 Mbp 5 75.25 Mbp
60 71 5.00 Mbp 9 25.95 Mbp
70 106 2.65 Mbp 14 21.08 Mbp
80 178 1.16 Mbp 22 11.32 Mbp
90 416 260.30 Kbp 103 401.44 Kbp
100 0 0
0.930x 889 1.19 Gbp 454 1.19 Gbp
NG based on genome size 1.28 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 18 March 2022
bAcrTri1.alt.cur.20220318.fasta.gz (270.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 4.60 Mbp 20 4.60 Mbp
20 57 2.70 Mbp 57 2.70 Mbp
30 112 1.96 Mbp 112 1.96 Mbp
40 193 1.30 Mbp 193 1.30 Mbp
50 316 0.85 Mbp 316 0.85 Mbp
60 511 0.51 Mbp 511 0.51 Mbp
70 908 177.82 Kbp 908 177.82 Kbp
80 0 0
90 0 0
100 0 0
0.757x 2222 0.97 Gbp 2221 0.97 Gbp
NG based on genome size 1.28 Gbp.
Assembly Metadata
assembly_vgp_standard_2.0/bAcrTri1.yaml (view)
species: Acridotheres tristis
specimen: bAcrTri1
projects:
  - vgp
primary: s3://genomeark/species/Acridotheres_tristis/bAcrTri1/assembly_vgp_standard_2.0/bAcrTri1.pri.asm.20220117.fasta.gz
haplotigs: s3://genomeark/species/Acridotheres_tristis/bAcrTri1/assembly_vgp_standard_2.0/bAcrTri1.alt.asm.20220117.fasta.gz
hic_bam: s3://genomeark/species/Acridotheres_tristis/bAcrTri1/assembly_vgp_standard_2.0/evaluation/pretext/s2/bAcrTri1_s2.bam
pretext: s3://genomeark/species/Acridotheres_tristis/bAcrTri1/assembly_vgp_standard_2.0/evaluation/pretext/s2/bAcrTri1_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Acridotheres_tristis/bAcrTri1/assembly_vgp_standard_2.0/evaluation/merqury/p/bAcrTri1_png/
pipeline:
  - hifiasm (0.15.4+galaxy0)
  - purge_dups (1.2.5+galaxy3)
  - solve (3.7.0+galaxy0)
  - salsa (2.3+galaxy2)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.