Anilios waitii

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) rAniWai1 45.24 Gbp N/A 30.0 GiB
Dovetail Genomics rAniWai1 47.34 Gbp N/A 33.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 21 August 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rAniWai1 PacBio HiFi (.fq) 45.24 Gbp N/A 30.0 GiB
Dovetail Genomics 47.34 Gbp N/A 33.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 21 August 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 4 December 2025
rAniWai1.hap1.cur.20251204.fasta.gz (497.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 6 21.04 Mbp 1 381.60 Mbp
20 16 15.23 Mbp 1 381.60 Mbp
30 29 11.94 Mbp 2 315.47 Mbp
40 45 9.96 Mbp 2 315.47 Mbp
50 64 7.75 Mbp 3 236.83 Mbp
60 91 5.49 Mbp 4 129.50 Mbp
70 130 3.84 Mbp 6 110.98 Mbp
80 188 2.25 Mbp 7 92.62 Mbp
90 292 1.19 Mbp 10 32.74 Mbp
100 766 10.30 Kbp 124 10.30 Kbp
1.000x 766 1.71 Gbp 124 1.71 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 4 December 2025
rAniWai1.hap2.cur.20251204.fasta.gz (459.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 7 24.08 Mbp 1 381.87 Mbp
20 14 19.89 Mbp 1 381.87 Mbp
30 25 14.36 Mbp 2 315.47 Mbp
40 39 10.56 Mbp 2 315.47 Mbp
50 58 7.62 Mbp 3 236.42 Mbp
60 86 5.42 Mbp 4 128.60 Mbp
70 125 3.57 Mbp 6 110.86 Mbp
80 183 2.35 Mbp 7 93.18 Mbp
90 284 1.22 Mbp 10 32.49 Mbp
100 735 2.21 Kbp 111 11.90 Kbp
1.000x 735 1.71 Gbp 111 1.71 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 11 September 2025
rAniWai1.MT.20250911.fasta.gz (5.2 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/rAniWai1.yml (view)
species: Anilios waitii
specimem: rAniWai1
projects:
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
combine_for_curation: true
hap1: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/rAniWai1.HiC.hap1.20250910.fasta.gz
hap2: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/rAniWai1.HiC.hap2.20250910.fasta.gz
pretext_hap1: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/s2/rAniWai1_hap1__s2_heatmap.pretext
pretext_hap2: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/s2/rAniWai1_hap2__s2_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Anilios_waitii/rAniWai1/assembly_vgp_HiC_2.0/evaluation/merqury/rAniWai1_png/
pacbio_read_dir: s3://genomeark/species/Anilios_waitii/rAniWai1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Anilios_waitii/rAniWai1/genomic_data/dovetail/
pipeline:
  - hifiasm (0.25.0+galaxy0)
  - yahs (1.2a.2+galaxy2)
  - VGP0 mitoHiFi workflow (v0.2.2)
  - VGP1 genomic profiling workflow (v0.4)
  - VGP4 HiFi HiC assembly workflow (v0.3.11)
  - VGP8 HiC scaffolding workflow (v2.2)
  - VGP9 decontamination workflow (v0.7) with database PlusPF 2022
  - Pre-curation worklfow (v1.0beta6)
notes: This was a Hifiasm-HiC assembly of rAniWai1 resulting in two haplotype assemblies.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.