Anniella stebbinsi

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank rAnnSte1: GCA_029215775.1 rAnnSte1: GCA_029215795.1
ENA rAnnSte1: GCA_029215775.1 rAnnSte1: GCA_029215795.1
UCSC Genome Browser rAnnSte1: GCA_029215775.1 rAnnSte1: GCA_029215795.1

No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) rAnnSte1 32.43 Gbp N/A 23.1 GiB
Dovetail Genomics rAnnSte1 70.90 Gbp N/A 34.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 26 November 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rAnnSte1 PacBio HiFi (.fq) 32.43 Gbp N/A 23.1 GiB
Dovetail Genomics 70.90 Gbp N/A 34.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 26 November 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 7 February 2025
rAnnSte1.hap1.cur.20250207.fasta.gz (549.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 280.99 Mbp 1 424.41 Mbp
20 2 251.12 Mbp 1 424.41 Mbp
30 3 182.56 Mbp 2 367.65 Mbp
40 4 144.49 Mbp 2 367.65 Mbp
50 5 120.11 Mbp 3 276.34 Mbp
60 7 104.30 Mbp 4 233.83 Mbp
70 9 89.87 Mbp 5 192.08 Mbp
80 11 84.48 Mbp 6 120.68 Mbp
90 15 30.24 Mbp 7 108.02 Mbp
100 161 12.90 Kbp 129 12.90 Kbp
1.000x 161 1.89 Gbp 129 1.89 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 7 February 2025
rAnnSte1.hap2.cur.20250207.fasta.gz (548.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 293.10 Mbp 1 424.40 Mbp
20 2 157.86 Mbp 1 424.40 Mbp
30 3 150.20 Mbp 2 367.82 Mbp
40 5 120.29 Mbp 2 367.82 Mbp
50 6 120.15 Mbp 3 276.53 Mbp
60 8 99.93 Mbp 4 234.21 Mbp
70 10 85.46 Mbp 5 191.65 Mbp
80 13 43.89 Mbp 6 120.29 Mbp
90 19 24.25 Mbp 7 101.58 Mbp
100 119 15.68 Kbp 91 15.68 Kbp
1.000x 119 1.89 Gbp 91 1.89 Gbp
NG based on genome size .
Assembly Metadata
assembly_genbank/rAnnSte1.yaml (view)
species: Anniella stebbinsi 
specimen: rAnnSte1
projects: 
  - vgp
assembled_by_group: California Conservation Genomics Project (CCGP)
data_location: S3
release_to: S3
hap1: s3://genomeark/species/Anniella_stebbinsi/rAnnSte1/assembly_genbank/rAnnSte1.hap1.GCA_029215775.1.fasta.gz
hap2: s3://genomeark/species/Anniella_stebbinsi/rAnnSte1/assembly_genbank/rAnnSte1.hap2.GCA_029215795.1.fasta.gz
pretext_hap1: s3://genomeark/species/Anniella_stebbinsi/rAnnSte1/assembly_genbank/evaluation/hap1/pretext/rAnnSte1_hap1__s2.heatmap.pretext
pretext_hap2: s3://genomeark/species/Anniella_stebbinsi/rAnnSte1/assembly_genbank/evaluation/hap2/pretext/rAnnSte1_hap2__s2.heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Anniella_stebbinsi/rAnnSte1/assembly_genbank/evaluation/merqury/rAnnSte1_png/
pacbio_read_dir: s3://genomeark/species/Anniella_stebbinsi/rAnnSte1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Anniella_stebbinsi/rAnnSte1/genomic_data/dovetail/
pipeline: 
  - hifiasm (0.16.1-r375)
  - SALSA (2)
notes: This was a Hifiasm-HiC assembly of rAnnSte1, assembled by the CCGP and present on NCBI as GCA_029215775.1 (hap1) and GCA_029215795.1 (hap2). Dovetail Omni-C for the HiC. This is a VGP Phase 1 species we are submitting for curation.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.