Anser albifrons

White-fronted goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAnsAlb
  name: Anser albifrons
  taxon_id: 50365
  common_name: White-fronted goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAnsAlb1
      biosample_id: SAMEA115433003
      sex: male
  genome_size: 1349640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAnsAlb1 61.41 Gbp 45.50x 19.0 GiB
Arima bAnsAlb1 85.56 Gbp 63.39x 25.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 16 September 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAnsAlb1 PacBio HiFi (.bam) 61.41 Gbp 45.50x 19.0 GiB
Arima 85.56 Gbp 63.39x 25.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 16 September 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 19 September 2024
bAnsAlb1.hap1.asm.20240919.fasta.gz (302.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 5.08 Mbp 1 210.41 Mbp
20 52 3.83 Mbp 2 161.21 Mbp
30 92 2.96 Mbp 3 121.92 Mbp
40 143 2.33 Mbp 4 85.99 Mbp
50 210 1.80 Mbp 6 62.18 Mbp
60 298 1.33 Mbp 9 33.16 Mbp
70 416 0.98 Mbp 15 21.05 Mbp
80 592 0.59 Mbp 24 8.66 Mbp
90 936 257.23 Kbp 134 492.00 Kbp
100 0 0
0.976x 2622 1.32 Gbp 1563 1.32 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 19 September 2024
bAnsAlb1.hap2.asm.20240919.fasta.gz (291.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 23 4.95 Mbp 1 210.46 Mbp
20 54 3.80 Mbp 2 161.29 Mbp
30 95 2.90 Mbp 3 121.97 Mbp
40 147 2.34 Mbp 4 85.08 Mbp
50 217 1.65 Mbp 6 62.25 Mbp
60 312 1.21 Mbp 9 33.26 Mbp
70 448 0.79 Mbp 15 20.39 Mbp
80 678 416.27 Kbp 25 7.66 Mbp
90 1588 28.12 Kbp 513 31.04 Kbp
100 0 0
0.904x 1995 1.22 Gbp 922 1.22 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 19 September 2024
bAnsAlb1.MT.20240919.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.