Aplochiton taeniatus

Peladilla

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fAplTae1: GCA_017639675.1 fAplTae1: GCA_017639685.1
ENA fAplTae1: GCA_017639675.1 fAplTae1: GCA_017639685.1
UCSC Genome Browser fAplTae1: GCA_017639675.1 fAplTae1: GCA_017639685.1

metadata.yaml (view) (edit on github)
species:
  short_name: fAplTae
  name: Aplochiton taeniatus
  taxon_id: 946358
  common_name: Peladilla
  order:
    name: Galaxiiformes
  family:
    name: Galaxiidae
  individuals:
    - short_name: fAplTae1
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fAplTae1 63.51 Gbp 137.48x 110.3 GiB
10x fAplTae1 79.92 Gbp 173.01x 38.4 GiB
Bionano fAplTae1 N/A 2460.89x 1.7 GiB
Arima fAplTae1 89.27 Gbp 193.24x 54.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 461.95 Mbp.
Last upload on 25 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAplTae1 PacBio CLR 63.51 Gbp 137.48x 110.3 GiB
10x 79.92 Gbp 173.01x 38.4 GiB
Bionano N/A 2460.89x 1.7 GiB
Arima 89.27 Gbp 193.24x 54.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 461.95 Mbp.
Last upload on 25 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 4 March 2021
fAplTae1.pri.cur.20210304.fasta.gz (126.3 MiB)

Quality: 61.6 errors/Mb (QV=42.10)

Contigs Scaffolds
NG LG Len LG Len
10 14 2.48 Mbp 0 55.69 Mbp
20 37 1.71 Mbp 1 45.01 Mbp
30 65 1.44 Mbp 3 22.95 Mbp
40 101 1.16 Mbp 5 21.74 Mbp
50 144 0.96 Mbp 7 20.39 Mbp
60 201 0.72 Mbp 9 20.03 Mbp
70 273 0.55 Mbp 11 19.65 Mbp
80 374 347.78 Kbp 14 18.48 Mbp
90 551 182.99 Kbp 17 16.49 Mbp
100 1198 682 bp 40 11.24 Kbp
1.000x 1199 453.79 Mbp 41 461.95 Mbp
NG based on genome size 461.95 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 4 March 2021
fAplTae1.alt.cur.20210304.fasta.gz (155.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 105 409.60 Kbp 105 409.60 Kbp
20 268 299.35 Kbp 268 299.35 Kbp
30 482 230.93 Kbp 482 230.93 Kbp
40 749 191.36 Kbp 749 191.36 Kbp
50 1074 156.48 Kbp 1074 156.48 Kbp
60 1470 128.69 Kbp 1470 128.69 Kbp
70 1958 101.07 Kbp 1958 101.07 Kbp
80 2596 74.91 Kbp 2596 74.91 Kbp
90 3527 46.97 Kbp 3527 46.99 Kbp
100 5700 271 bp 5689 271 bp
1.000x 5701 0.56 Gbp 5690 0.56 Gbp
NG based on genome size 461.95 Mbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.