Ascidia mentula

(A solitary sea squirt)

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank kaAscMent1: GCA_947561715.1 kaAscMent1: GCA_947561685.1
ENA kaAscMent1: GCA_947561715.1 kaAscMent1: GCA_947561685.1
UCSC Genome Browser kaAscMent1: GCA_947561715.1 kaAscMent1: GCA_947561685.1

metadata.yaml (view) (edit on github)
species:
  short_name: kaAscMent
  name: Ascidia mentula
  taxon_id: 38561
  common_name: (A solitary sea squirt)
  order:
    name: Phlebobranchia
  family:
    name: Ascidiidae
  individuals:
    - short_name: kaAscMent1
      biosample_id: SAMEA8724667
      sex:
  genome_size: 107580000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-SA 3.0 Matthieu Sontag (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kaAscMent1 15.34 Gbp 142.59x 9.6 GiB
Arima kaAscMent1 109.47 Gbp 1017.60x 32.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 107.58 Mbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kaAscMent1 PacBio HiFi (.bam) 15.34 Gbp 142.59x 9.6 GiB
Arima 109.47 Gbp 1017.60x 32.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 107.58 Mbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 9 March 2023
kaAscMent1.pri.cur.20230309.fasta.gz (52.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 21.17 Mbp 1 27.92 Mbp
20 2 19.66 Mbp 1 27.92 Mbp
30 2 19.66 Mbp 2 23.17 Mbp
40 3 15.45 Mbp 2 23.17 Mbp
50 3 15.45 Mbp 3 22.72 Mbp
60 4 15.29 Mbp 3 22.72 Mbp
70 5 12.72 Mbp 4 22.35 Mbp
80 6 11.93 Mbp 4 22.35 Mbp
90 7 11.89 Mbp 5 21.17 Mbp
100 7 11.89 Mbp 5 21.17 Mbp
1.831x 128 196.97 Mbp 96 196.98 Mbp
NG based on genome size 107.58 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 9 March 2023
kaAscMent1.alt.cur.20230309.fasta.gz (50.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 14.25 Mbp 1 14.25 Mbp
20 2 8.23 Mbp 2 8.23 Mbp
30 4 7.18 Mbp 4 7.18 Mbp
40 5 6.93 Mbp 5 6.93 Mbp
50 7 6.55 Mbp 7 6.55 Mbp
60 9 4.85 Mbp 9 4.85 Mbp
70 11 4.08 Mbp 11 4.08 Mbp
80 15 2.94 Mbp 15 2.94 Mbp
90 18 2.51 Mbp 18 2.51 Mbp
100 23 1.99 Mbp 23 1.99 Mbp
1.708x 323 183.79 Mbp 323 183.79 Mbp
NG based on genome size 107.58 Mbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.