Balaenoptera physalus

Fin whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mBalPhy
  name: Balaenoptera physalus
  taxon_id: 9770
  common_name: Fin whale
  order:
    name: Cetacea
  family:
    name: Balaenopteridae
  individuals:
    - short_name: mBalPhy2
      biosample_id: SAMEA114493136
      sex: male
  genome_size: 2865540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mBalPhy2 73.45 Gbp 25.63x 24.5 GiB
Arima mBalPhy2 403.62 Gbp 140.85x 111.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.87 Gbp.
Last upload on 23 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mBalPhy2 PacBio HiFi (.bam) 73.45 Gbp 25.63x 24.5 GiB
Arima 403.62 Gbp 140.85x 111.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.87 Gbp.
Last upload on 23 May 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 1 March 2025
mBalPhy2.hap1.cur.20250301.fasta.gz (816.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 36 6.68 Mbp 2 180.01 Mbp
20 87 4.98 Mbp 4 151.30 Mbp
30 152 3.98 Mbp 6 146.86 Mbp
40 232 3.21 Mbp 8 124.95 Mbp
50 333 2.52 Mbp 10 114.40 Mbp
60 459 2.08 Mbp 12 110.87 Mbp
70 617 1.61 Mbp 15 98.23 Mbp
80 819 1.27 Mbp 18 85.84 Mbp
90 1084 0.93 Mbp 22 46.96 Mbp
100 1457 0.63 Mbp 213 0.91 Mbp
1.201x 4128 3.44 Gbp 2612 3.44 Gbp
NG based on genome size 2.87 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 1 March 2025
mBalPhy2.hap2.cur.20250301.fasta.gz (730.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 35 6.58 Mbp 2 176.97 Mbp
20 85 5.01 Mbp 4 149.73 Mbp
30 151 3.80 Mbp 6 119.75 Mbp
40 237 2.97 Mbp 8 113.83 Mbp
50 347 2.30 Mbp 11 106.92 Mbp
60 490 1.73 Mbp 14 90.51 Mbp
70 682 1.30 Mbp 17 82.43 Mbp
80 957 0.83 Mbp 21 37.34 Mbp
90 1458 388.00 Kbp 332 493.91 Kbp
100 0 0
0.995x 3706 2.85 Gbp 2448 2.85 Gbp
NG based on genome size 2.87 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 1 June 2024
mBalPhy2.MT.20240601.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.