Balaenoptera ricei
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | mBalRic1: GCA_028017805.1 mBalRic1: GCA_028023285.1 | |
ENA | mBalRic1: GCA_028017805.1 mBalRic1: GCA_028023285.1 | |
UCSC Genome Browser | mBalRic1: GCA_028017805.1 mBalRic1: GCA_028023285.1 |
CC BY-SA 4.0 Maria Beatriz Soares (Wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | mBalRic1 | 85.07 Gbp | 31.76x | 65.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.68 Gbp.
Last upload on 25 August 2022.
Coverage based on genome size 2.68 Gbp.
Last upload on 25 August 2022.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mBalRic1 | PacBio HiFi (.fq) | 85.07 Gbp | 31.76x | 65.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.68 Gbp.
Last upload on 25 August 2022.
Coverage based on genome size 2.68 Gbp.
Last upload on 25 August 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 25 November 2022
mBalRic1.pri.cur.20221125.fasta.gz (727.4 MiB)
Quality: not computed
Version assembly_curated from 25 November 2022
mBalRic1.pri.cur.20221125.fasta.gz (727.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 101.99 Mbp | 1 | 188.26 Mbp |
20 | 5 | 81.64 Mbp | 2 | 182.69 Mbp |
30 | 9 | 67.12 Mbp | 4 | 143.51 Mbp |
40 | 13 | 53.00 Mbp | 6 | 123.25 Mbp |
50 | 19 | 36.54 Mbp | 8 | 122.07 Mbp |
60 | 27 | 29.69 Mbp | 11 | 107.34 Mbp |
70 | 38 | 19.31 Mbp | 13 | 103.17 Mbp |
80 | 55 | 12.17 Mbp | 16 | 89.66 Mbp |
90 | 106 | 2.07 Mbp | 19 | 64.77 Mbp |
100 | 1107 | 1.00 Kbp | 773 | 1.00 Kbp |
1.000x | 1108 | 2.68 Gbp | 774 | 2.68 Gbp |
NG based on genome size 2.68 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 25 November 2022
mBalRic1.alt.cur.20221125.fasta.gz (56.4 KiB)
Quality: not computed
Version assembly_curated from 25 November 2022
mBalRic1.alt.cur.20221125.fasta.gz (56.4 KiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
20 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
30 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
40 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
50 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
60 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
70 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
80 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
90 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
100 | 0 | 186.68 Kbp | 0 | 186.68 Kbp |
1.000x | 1 | 186.68 Kbp | 1 | 186.68 Kbp |
NG based on genome size 2.68 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 25 September 2022
mBalRic1.HiC.hap1.20220925.fasta.gz (738.8 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 25 September 2022
mBalRic1.HiC.hap1.20220925.fasta.gz (738.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 104.75 Mbp | 1 | 174.67 Mbp |
20 | 5 | 89.69 Mbp | 3 | 146.21 Mbp |
30 | 9 | 67.13 Mbp | 5 | 128.76 Mbp |
40 | 13 | 47.55 Mbp | 7 | 118.12 Mbp |
50 | 20 | 36.00 Mbp | 10 | 109.39 Mbp |
60 | 29 | 28.47 Mbp | 12 | 106.29 Mbp |
70 | 42 | 18.74 Mbp | 15 | 93.25 Mbp |
80 | 61 | 10.20 Mbp | 18 | 85.15 Mbp |
90 | 127 | 1.88 Mbp | 42 | 2.82 Mbp |
100 | 1168 | 11.69 Kbp | 1037 | 11.69 Kbp |
1.000x | 1169 | 2.78 Gbp | 1038 | 2.84 Gbp |
NG based on genome size 2.68 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 25 September 2022
mBalRic1.HiC.hap2.20220925.fasta.gz (727.7 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 25 September 2022
mBalRic1.HiC.hap2.20220925.fasta.gz (727.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 101.99 Mbp | 1 | 179.85 Mbp |
20 | 5 | 81.64 Mbp | 2 | 172.57 Mbp |
30 | 9 | 67.12 Mbp | 4 | 142.10 Mbp |
40 | 13 | 53.00 Mbp | 7 | 114.25 Mbp |
50 | 19 | 36.54 Mbp | 9 | 108.20 Mbp |
60 | 27 | 29.69 Mbp | 11 | 105.43 Mbp |
70 | 38 | 19.31 Mbp | 14 | 91.10 Mbp |
80 | 55 | 12.17 Mbp | 17 | 80.35 Mbp |
90 | 106 | 2.07 Mbp | 27 | 2.92 Mbp |
100 | 1108 | 1.00 Kbp | 974 | 1.00 Kbp |
1.000x | 1109 | 2.68 Gbp | 975 | 2.69 Gbp |
NG based on genome size 2.68 Gbp.
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.