Barbatula barbatula

stone loach

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fBarBar1: GCA_947034865.1 fBarBar1: GCA_947034905.1
ENA fBarBar1: GCA_947034865.1 fBarBar1: GCA_947034905.1
UCSC Genome Browser fBarBar1: GCA_947034865.1 fBarBar1: GCA_947034905.1

metadata.yaml (view) (edit on github)
species:
  short_name: fBarBar
  name: Barbatula barbatula
  taxon_id: 135647
  common_name: stone loach
  order:
    name: Cypriniformes
  family:
    name: Nemacheilidae
  individuals:
    - short_name: fBarBar1
      biosample_id: SAMEA11296540
      sex: female
  genome_size: 528120000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY 3.0 Michal Maňas (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fBarBar1 18.84 Gbp 35.67x 11.3 GiB
Arima fBarBar1 124.13 Gbp 235.04x 36.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.53 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fBarBar1 PacBio HiFi (.bam) 18.84 Gbp 35.67x 11.3 GiB
Arima 124.13 Gbp 235.04x 36.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.53 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 28 February 2023
fBarBar1.pri.cur.20230228.fasta.gz (168.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 6 6.18 Mbp 1 33.03 Mbp
20 15 4.96 Mbp 3 28.56 Mbp
30 27 4.21 Mbp 5 26.40 Mbp
40 40 3.61 Mbp 7 25.44 Mbp
50 56 3.20 Mbp 9 24.51 Mbp
60 74 2.59 Mbp 11 24.42 Mbp
70 98 1.90 Mbp 13 23.69 Mbp
80 129 1.50 Mbp 15 23.13 Mbp
90 172 1.03 Mbp 18 22.75 Mbp
100 243 0.54 Mbp 20 21.57 Mbp
1.169x 925 0.62 Gbp 100 0.62 Gbp
NG based on genome size 0.53 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 28 February 2023
fBarBar1.alt.cur.20230228.fasta.gz (158.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 1.81 Mbp 22 1.81 Mbp
20 57 1.34 Mbp 57 1.34 Mbp
30 103 1.02 Mbp 103 1.02 Mbp
40 160 0.83 Mbp 160 0.83 Mbp
50 232 0.66 Mbp 232 0.66 Mbp
60 321 0.53 Mbp 321 0.53 Mbp
70 435 400.50 Kbp 435 400.50 Kbp
80 593 283.08 Kbp 593 283.08 Kbp
90 817 185.51 Kbp 817 185.51 Kbp
100 1219 89.80 Kbp 1219 89.80 Kbp
1.083x 2237 0.57 Gbp 2237 0.57 Gbp
NG based on genome size 0.53 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.