Benthalbella elongata

perl eyes

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fBenEln
  name: Benthalbella elongata
  taxon_id: 1090477
  common_name: perl eyes
  order:
    name: Aulopiformes
  family:
    name: Scopelarchidae
  individuals:
    - short_name: fBenEln1
      biosample_id: SAMEA12815437
      sex:
  genome_size: 1274456250
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fBenEln1 55.96 Gbp 43.91x 86.2 GiB
Arima fBenEln1 124.42 Gbp 97.62x 37.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.27 Gbp.
Last upload on 13 January 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fBenEln1 PacBio HiFi (.bam) 55.96 Gbp 43.91x 86.2 GiB
Arima 124.42 Gbp 97.62x 37.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.27 Gbp.
Last upload on 13 January 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 23 May 2024
fBenEln1.pri.asm.20240523.fasta.gz (417.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 42 2.22 Mbp 2 75.94 Mbp
20 113 1.56 Mbp 4 69.04 Mbp
30 206 1.21 Mbp 6 67.50 Mbp
40 325 0.98 Mbp 8 66.29 Mbp
50 469 0.80 Mbp 10 64.70 Mbp
60 643 0.66 Mbp 12 63.10 Mbp
70 860 0.52 Mbp 14 62.33 Mbp
80 1133 416.65 Kbp 16 60.32 Mbp
90 1483 318.49 Kbp 18 53.36 Mbp
100 1951 236.69 Kbp 20 50.46 Mbp
1.357x 8706 1.73 Gbp 3159 1.73 Gbp
NG based on genome size 1.27 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 23 May 2024
fBenEln1.alt.asm.20240523.fasta.gz (400.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 82 0.93 Mbp 82 0.93 Mbp
20 257 0.61 Mbp 257 0.61 Mbp
30 500 458.22 Kbp 499 458.29 Kbp
40 819 350.52 Kbp 818 350.69 Kbp
50 1228 278.23 Kbp 1227 278.48 Kbp
60 1744 220.33 Kbp 1742 220.46 Kbp
70 2399 172.76 Kbp 2396 173.01 Kbp
80 3242 133.48 Kbp 3238 133.57 Kbp
90 4335 101.56 Kbp 4330 101.78 Kbp
100 5789 75.60 Kbp 5779 75.75 Kbp
1.412x 22322 1.80 Gbp 22291 1.80 Gbp
NG based on genome size 1.27 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 23 May 2024
fBenEln1.MT.20240523.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.