Buglossidium luteum

solenette

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fBugLut
  name: Buglossidium luteum
  taxon_id: 90071
  common_name: solenette
  order:
    name: Pleuronectiformes
  family:
    name: Soleidae
  individuals:
    - short_name: fBugLut1
      biosample_id: SAMEA110450066
      sex:
  genome_size: 713940000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-SA 4.0 Romaine (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fBugLut1 27.08 Gbp 37.93x 16.6 GiB
Arima fBugLut1 291.28 Gbp 407.98x 85.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.71 Gbp.
Last upload on 6 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fBugLut1 PacBio HiFi (.bam) 27.08 Gbp 37.93x 16.6 GiB
Arima 291.28 Gbp 407.98x 85.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.71 Gbp.
Last upload on 6 February 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 26 April 2024
fBugLut1.pri.asm.20240426.fasta.gz (173.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 6.68 Mbp 2 35.89 Mbp
20 21 4.72 Mbp 4 30.88 Mbp
30 38 3.81 Mbp 6 30.13 Mbp
40 58 3.10 Mbp 9 28.18 Mbp
50 86 2.32 Mbp 11 24.38 Mbp
60 121 1.72 Mbp 14 22.97 Mbp
70 173 1.06 Mbp 18 17.75 Mbp
80 270 0.50 Mbp 27 2.90 Mbp
90 0 0
100 0 0
0.896x 1175 0.64 Gbp 662 0.64 Gbp
NG based on genome size 0.71 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 26 April 2024
fBugLut1.alt.asm.20240426.fasta.gz (227.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 6 9.42 Mbp 6 9.42 Mbp
20 14 6.99 Mbp 14 6.99 Mbp
30 26 5.86 Mbp 26 5.86 Mbp
40 38 5.36 Mbp 38 5.36 Mbp
50 52 4.68 Mbp 52 4.68 Mbp
60 68 4.21 Mbp 68 4.21 Mbp
70 86 3.53 Mbp 86 3.53 Mbp
80 108 3.15 Mbp 108 3.15 Mbp
90 132 2.73 Mbp 132 2.73 Mbp
100 161 2.34 Mbp 161 2.34 Mbp
1.468x 1136 1.05 Gbp 1136 1.05 Gbp
NG based on genome size 0.71 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 26 April 2024
fBugLut1.MT.20240426.fasta.gz (0.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.