Chiroxiphia lanceolata

lance-tailed manakin

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bChiLan1: GCA_009829145.1 bChiLan1: GCA_009829205.1
ENA bChiLan1: GCA_009829145.1 bChiLan1: GCA_009829205.1
UCSC Genome Browser bChiLan1: GCA_009829145.1 bChiLan1: GCA_009829205.1

metadata.yaml (view) (edit on github)
species:
  common_name: lance-tailed manakin
  family:
    name: Pipridae
  genome_size: 1230000000
  genome_size_method: null
  individuals:
  - short_name: bChiLan1
  name: Chiroxiphia lanceolata
  order:
    name: Passeriformes
  short_name: bChiLan
  taxon_id: 296741
  project: [ vgp ]
Copyright Emily DuVal, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bChiLan1 83.49 Gbp 67.88x 143.6 GiB
10x bChiLan1 98.30 Gbp 79.91x 46.4 GiB
Bionano bChiLan1 N/A 351.92x 782.0 MiB
Arima bChiLan1 111.44 Gbp 90.60x 68.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.23 Gbp.
Last upload on 27 July 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bChiLan1 PacBio CLR 83.49 Gbp 67.88x 143.6 GiB
10x 98.30 Gbp 79.91x 46.4 GiB
Bionano N/A 351.92x 782.0 MiB
Arima 111.44 Gbp 90.60x 68.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.23 Gbp.
Last upload on 27 July 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 October 2019
bChiLan1.pri.cur.20191008.fasta.gz (316.6 MiB)

Quality: 219.4 errors/Mb (QV=36.59)

Contigs Scaffolds
NG LG Len LG Len
10 1 63.52 Mbp 0 156.34 Mbp
20 4 33.55 Mbp 1 120.40 Mbp
30 8 27.94 Mbp 2 117.28 Mbp
40 13 21.53 Mbp 4 75.61 Mbp
50 20 15.43 Mbp 5 75.36 Mbp
60 29 11.78 Mbp 8 37.67 Mbp
70 41 7.73 Mbp 12 21.53 Mbp
80 63 3.34 Mbp 19 15.08 Mbp
90 0 0
100 0 0
0.883x 299 1.09 Gbp 93 1.09 Gbp
NG based on genome size 1.23 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 8 October 2019
bChiLan1.alt.cur.20191008.fasta.gz (311.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 27 3.21 Mbp 27 3.21 Mbp
20 75 2.13 Mbp 75 2.13 Mbp
30 145 1.52 Mbp 145 1.52 Mbp
40 238 1.18 Mbp 238 1.18 Mbp
50 361 0.85 Mbp 361 0.85 Mbp
60 537 0.55 Mbp 537 0.55 Mbp
70 861 236.23 Kbp 861 236.23 Kbp
80 2183 52.83 Kbp 2183 52.83 Kbp
90 0 0
100 0 0
0.857x 4269 1.05 Gbp 4269 1.05 Gbp
NG based on genome size 1.23 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.