Chlamydotis macqueenii

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CC BY-SA 4.0 Habib M’henni (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bChlMac1 1172.21 Gbp N/A 2.0 TiB
PacBio HiFi (.fq) bChlMac1 223.80 Gbp N/A 143.9 GiB
PacBio HiFi (.bam) bChlMac1 202.82 Gbp N/A 711.5 GiB
Arima bChlMac1 159.26 Gbp N/A 76.7 GiB
Illumina bChlMac2 110.13 Gbp N/A 52.8 GiB
bChlMac3 72.61 Gbp N/A 35.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 21 February 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bChlMac1 PacBio HiFi (subreads) 1172.21 Gbp N/A 2.0 TiB
PacBio HiFi (.fq) 223.80 Gbp N/A 143.9 GiB
PacBio HiFi (.bam) 202.82 Gbp N/A 711.5 GiB
Arima 159.26 Gbp N/A 76.7 GiB
bChlMac2 Illumina 110.13 Gbp N/A 52.8 GiB
bChlMac3 Illumina 72.61 Gbp N/A 35.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 21 February 2025.
Assemblies
Individual 1 Maternal Assembly
Version assembly_curated from 10 October 2023
bChlMac1.mat.cur.20231010.fasta.gz (358.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 94.96 Mbp 1 215.69 Mbp
20 3 80.18 Mbp 2 164.29 Mbp
30 5 67.85 Mbp 3 128.06 Mbp
40 7 57.36 Mbp 4 84.74 Mbp
50 10 25.34 Mbp 5 84.62 Mbp
60 16 22.30 Mbp 7 54.81 Mbp
70 22 17.74 Mbp 10 38.75 Mbp
80 31 9.91 Mbp 14 23.40 Mbp
90 49 3.79 Mbp 21 12.96 Mbp
100 428 24.80 Kbp 328 24.80 Kbp
1.000x 428 1.27 Gbp 328 1.27 Gbp
NG based on genome size .
Individual 1 Paternal Assembly
Version assembly_curated from 1 November 2023
bChlMac1.pat.cur.20231101.fasta.gz (313.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 163.36 Mbp 1 214.59 Mbp
20 2 115.06 Mbp 2 165.12 Mbp
30 3 90.77 Mbp 2 165.12 Mbp
40 5 58.03 Mbp 3 112.93 Mbp
50 7 29.08 Mbp 4 84.30 Mbp
60 12 22.59 Mbp 6 47.95 Mbp
70 17 18.86 Mbp 8 39.02 Mbp
80 25 11.61 Mbp 13 21.28 Mbp
90 41 4.02 Mbp 20 10.37 Mbp
100 428 13.92 Kbp 344 13.92 Kbp
1.000x 428 1.11 Gbp 344 1.11 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 13 February 2023
bChlMac1.MT.20230213.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.