Chroicocephalus ridibundus

black-headed gull

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bChrRid
  name: Chroicocephalus ridibundus
  taxon_id: 1192867
  common_name: black-headed gull
  order:
    name: Charadriiformes
  family:
    name: Laridae
  individuals:
    - short_name: bChrRid1
      biosample_id: SAMEA112468038
      sex: male
  genome_size: 1779960000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bChrRid1 51.41 Gbp 28.88x 30.5 GiB
Arima bChrRid1 197.55 Gbp 110.99x 59.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.78 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bChrRid1 PacBio HiFi (.bam) 51.41 Gbp 28.88x 30.5 GiB
Arima 197.55 Gbp 110.99x 59.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.78 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 January 2024
bChrRid1.pri.cur.20240126.fasta.gz (370.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 9.23 Mbp 1 220.91 Mbp
20 38 6.71 Mbp 2 170.22 Mbp
30 68 5.29 Mbp 4 95.72 Mbp
40 106 3.96 Mbp 6 83.76 Mbp
50 157 2.94 Mbp 8 59.41 Mbp
60 229 1.99 Mbp 12 23.79 Mbp
70 353 0.97 Mbp 32 2.44 Mbp
80 0 0
90 0 0
100 0 0
0.796x 1191 1.42 Gbp 729 1.42 Gbp
NG based on genome size 1.78 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 January 2024
bChrRid1.alt.cur.20240126.fasta.gz (362.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 34 3.99 Mbp 34 3.99 Mbp
20 86 2.94 Mbp 86 2.94 Mbp
30 157 2.16 Mbp 157 2.16 Mbp
40 252 1.65 Mbp 252 1.65 Mbp
50 380 1.21 Mbp 380 1.21 Mbp
60 565 0.75 Mbp 565 0.75 Mbp
70 940 273.53 Kbp 940 273.53 Kbp
80 0 0
90 0 0
100 0 0
0.759x 2754 1.35 Gbp 2754 1.35 Gbp
NG based on genome size 1.78 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
bChrRid1.MT.20231107.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.