Ciconia maguari

maguari stork

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bCicMag1: GCA_017639555.1 bCicMag1: GCA_017639665.1
ENA bCicMag1: GCA_017639555.1 bCicMag1: GCA_017639665.1
UCSC Genome Browser bCicMag1: GCA_017639555.1 bCicMag1: GCA_017639665.1

metadata.yaml (view) (edit on github)
species:
  common_name: maguari stork
  family:
    name: Ciconiidae
  genome_size: 1000000000
  genome_size_method: null
  individuals:
  - short_name: bCicMag1
  name: Ciconia maguari
  order:
    name: Ciconiiformes
  short_name: bCicMag
  taxon_id: 52777
  project: [ vgp ]
CC BY-NC-SA 2.0 Lip Kee (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bCicMag1 88.25 Gbp 88.25x 154.4 GiB
10x bCicMag1 154.77 Gbp 154.77x 78.2 GiB
Bionano bCicMag1 N/A 806.51x 1.4 GiB
Arima bCicMag1 112.29 Gbp 112.29x 65.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 3 March 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCicMag1 PacBio CLR 88.25 Gbp 88.25x 154.4 GiB
10x 154.77 Gbp 154.77x 78.2 GiB
Bionano N/A 806.51x 1.4 GiB
Arima 112.29 Gbp 112.29x 65.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 3 March 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 July 2020
bCicMag1.pri.cur.20200715.fasta.gz (357.6 MiB)

Quality: 213.5 errors/Mb (QV=36.71)

Contigs Scaffolds
NG LG Len LG Len
10 1 54.29 Mbp 0 220.37 Mbp
20 3 43.90 Mbp 0 220.37 Mbp
30 6 32.95 Mbp 1 169.11 Mbp
40 9 29.67 Mbp 2 128.64 Mbp
50 13 24.94 Mbp 2 128.64 Mbp
60 17 23.76 Mbp 3 87.15 Mbp
70 22 16.21 Mbp 5 72.61 Mbp
80 29 13.21 Mbp 6 67.88 Mbp
90 37 11.21 Mbp 8 46.75 Mbp
100 50 6.26 Mbp 10 25.27 Mbp
1.217x 384 1.22 Gbp 152 1.24 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 July 2020
bCicMag1.alt.cur.20200715.fasta.gz (286.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 77 0.94 Mbp 77 0.94 Mbp
20 205 0.66 Mbp 205 0.66 Mbp
30 376 0.52 Mbp 376 0.52 Mbp
40 592 414.48 Kbp 592 414.48 Kbp
50 862 334.88 Kbp 862 334.88 Kbp
60 1195 268.90 Kbp 1195 268.90 Kbp
70 1613 209.36 Kbp 1613 209.36 Kbp
80 2167 153.50 Kbp 2167 153.50 Kbp
90 3012 87.56 Kbp 3012 87.56 Kbp
100 0 0
0.968x 4283 0.97 Gbp 4278 0.97 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 26 February 2020
bCicMag1.MT.20200226.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.