Cygnus cygnus

common whooper

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bCygCyg
  name: Cygnus cygnus
  taxon_id: 219595
  common_name: common whooper
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bCygCyg1
      biosample_id: SAMEA113398829
      sex: female
  genome_size: 1471890000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bCygCyg1 40.46 Gbp 27.49x 12.3 GiB
Arima bCygCyg1 53.45 Gbp 36.32x 15.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.47 Gbp.
Last upload on 1 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCygCyg1 PacBio HiFi (.bam) 40.46 Gbp 27.49x 12.3 GiB
Arima 53.45 Gbp 36.32x 15.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.47 Gbp.
Last upload on 1 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 7 May 2025
bCygCyg1.hap1.cur.20250507.fasta.gz (354.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 7.30 Mbp 1 212.21 Mbp
20 38 5.12 Mbp 2 161.38 Mbp
30 71 3.96 Mbp 3 120.55 Mbp
40 113 3.04 Mbp 5 77.84 Mbp
50 169 2.19 Mbp 7 42.02 Mbp
60 250 1.47 Mbp 11 25.76 Mbp
70 376 0.91 Mbp 18 16.45 Mbp
80 620 375.76 Kbp 56 0.76 Mbp
90 1480 92.23 Kbp 783 95.90 Kbp
100 0 0
0.943x 2794 1.39 Gbp 2057 1.39 Gbp
NG based on genome size 1.47 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 7 May 2025
bCygCyg1.hap2.cur.20250507.fasta.gz (310.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 7.30 Mbp 1 211.97 Mbp
20 42 4.60 Mbp 2 160.54 Mbp
30 78 3.66 Mbp 3 120.83 Mbp
40 125 2.72 Mbp 5 65.87 Mbp
50 188 1.94 Mbp 8 33.01 Mbp
60 290 1.12 Mbp 14 20.26 Mbp
70 510 345.08 Kbp 30 2.14 Mbp
80 0 0
90 0 0
100 0 0
0.763x 2036 1.12 Gbp 1430 1.12 Gbp
NG based on genome size 1.47 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.