Cynocephalus volans

Philippine flying lemur

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mCynVol1: GCA_027409185.1 mCynVol1: GCA_027409165.1
ENA mCynVol1: GCA_027409185.1 mCynVol1: GCA_027409165.1
UCSC Genome Browser mCynVol1: GCA_027409185.1 mCynVol1: GCA_027409165.1

metadata.yaml (view) (edit on github)
species:
  name: Cynocephalus volans
  individuals:
  - short_name: mCynVol1
  short_name: mCynVol
  taxon_id: 110931
  common_name: Philippine flying lemur
  genome_size: 3554000000
  genome_size_method: GoAT
  order:
    name: Dermoptera
  family:
    name: Cynocephalidae
  project: [ vgp ]
CC BY-NC-SA 2.0 Philippines NCCA (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mCynVol1 351.98 Gbp 99.04x 860.6 GiB
PacBio HiFi (.fq) mCynVol1 113.11 Gbp 31.83x 86.5 GiB
PacBio HiFi (.bam) mCynVol1 113.57 Gbp 31.96x 385.0 GiB
Arima mCynVol1 247.97 Gbp 69.77x 123.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.55 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mCynVol1 PacBio HiFi (subreads) 351.98 Gbp 99.04x 860.6 GiB
PacBio HiFi (.fq) 113.11 Gbp 31.83x 86.5 GiB
PacBio HiFi (.bam) 113.57 Gbp 31.96x 385.0 GiB
Arima 247.97 Gbp 69.77x 123.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.55 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 20 May 2022
mCynVol1.pri.cur.20220520.fasta.gz (796.3 MiB)

Quality: 0.1 errors/Mb (QV=69.55)

Contigs Scaffolds
NG LG Len LG Len
10 1 156.92 Mbp 1 234.98 Mbp
20 4 126.66 Mbp 2 187.14 Mbp
30 7 91.85 Mbp 4 169.06 Mbp
40 11 69.20 Mbp 7 165.29 Mbp
50 17 51.99 Mbp 9 152.85 Mbp
60 27 31.32 Mbp 11 132.77 Mbp
70 46 9.23 Mbp 15 98.15 Mbp
80 0 0
90 0 0
100 0 0
0.792x 246 2.81 Gbp 130 2.81 Gbp
NG based on genome size 3.55 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 20 May 2022
mCynVol1.alt.cur.20220520.fasta.gz (706.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 9.51 Mbp 28 9.51 Mbp
20 74 6.93 Mbp 74 6.93 Mbp
30 133 5.06 Mbp 133 5.06 Mbp
40 217 3.53 Mbp 217 3.53 Mbp
50 338 2.45 Mbp 338 2.45 Mbp
60 529 1.40 Mbp 529 1.40 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.690x 1750 2.45 Gbp 1750 2.45 Gbp
NG based on genome size 3.55 Gbp.
Assembly Metadata
assembly_vgp_standard_2.0/mCynVol1.yaml (view)
species: Cynocephalus volans
specimen: mCynVol1
projects:
  - vgp
primary: s3://genomeark/species/Cynocephalus_volans/mCynVol1/assembly_vgp_standard_2.0/mCynVol1.pri.asm.20220324.fasta.gz
haplotigs: s3://genomeark/species/Cynocephalus_volans/mCynVol1/assembly_vgp_standard_2.0/mCynVol1.alt.asm.20220324.fasta.gz
hic_bam: s3://genomeark/species/Cynocephalus_volans/mCynVol1/assembly_vgp_standard_2.0/evaluation/pretext/s2/mCynVol1_s2.bam
pretext: s3://genomeark/species/Cynocephalus_volans/mCynVol1/assembly_vgp_standard_2.0/evaluation/pretext/s2/mCynVol1_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Cynocephalus_volans/mCynVol1/assembly_vgp_standard_2.0/evaluation/merqury/p/mCynVol1_png/
pipeline:
  - hifiasm (0.16.1+galaxy2)
  - purge_dups (1.2.5+galaxy4)
  - salsa (2.3+galaxy2)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.