Diplecogaster bimaculata

two-spotted clingfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fDipBim
  name: Diplecogaster bimaculata
  taxon_id: 210029
  common_name: two-spotted clingfish
  order:
    name: Gobiesociformes
  family:
    name: Gobiesocidae
  individuals:
    - short_name: fDipBim1
      biosample_id: SAMEA115106925
      sex: female
  genome_size: 896092500
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fDipBim1 49.77 Gbp 55.54x 15.1 GiB
Arima fDipBim1 112.09 Gbp 125.09x 29.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.90 Gbp.
Last upload on 8 August 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fDipBim1 PacBio HiFi (.bam) 49.77 Gbp 55.54x 15.1 GiB
Arima 112.09 Gbp 125.09x 29.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.90 Gbp.
Last upload on 8 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 9 August 2024
fDipBim1.hap1.asm.20240809.fasta.gz (487.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 3.91 Mbp 1 171.35 Mbp
20 46 3.06 Mbp 2 131.87 Mbp
30 77 2.77 Mbp 2 131.87 Mbp
40 112 2.44 Mbp 3 117.24 Mbp
50 151 2.15 Mbp 4 105.32 Mbp
60 196 1.86 Mbp 5 105.25 Mbp
70 247 1.65 Mbp 5 105.25 Mbp
80 304 1.50 Mbp 6 100.87 Mbp
90 367 1.36 Mbp 7 93.99 Mbp
100 437 1.20 Mbp 8 91.86 Mbp
2.473x 6574 2.22 Gbp 3042 2.22 Gbp
NG based on genome size 0.90 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 9 August 2024
fDipBim1.hap2.asm.20240809.fasta.gz (483.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 3.86 Mbp 1 180.90 Mbp
20 45 3.05 Mbp 1 180.90 Mbp
30 77 2.63 Mbp 2 145.48 Mbp
40 113 2.26 Mbp 3 127.64 Mbp
50 156 2.01 Mbp 3 127.64 Mbp
60 202 1.84 Mbp 4 117.73 Mbp
70 254 1.64 Mbp 5 111.20 Mbp
80 312 1.47 Mbp 6 107.89 Mbp
90 376 1.34 Mbp 7 94.97 Mbp
100 446 1.22 Mbp 8 93.75 Mbp
2.440x 5882 2.19 Gbp 2372 2.19 Gbp
NG based on genome size 0.90 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 9 August 2024
fDipBim1.MT.20240809.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.