Elgaria multicarinata

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Resource Primary Assembly Alternate Assembly
GenBank rElgMul1: GCA_023053635.1 rElgMul1: GCA_023053675.1
ENA rElgMul1: GCA_023053635.1 rElgMul1: GCA_023053675.1
UCSC Genome Browser rElgMul1: GCA_023053635.1 rElgMul1: GCA_023053675.1

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) rElgMul1 81.15 Gbp 45.32x 66.8 GiB
Dovetail Genomics rElgMul1 77.21 Gbp 43.12x 33.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.79 Gbp.
Last upload on 12 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rElgMul1 PacBio HiFi (.fq) 81.15 Gbp 45.32x 66.8 GiB
Dovetail Genomics 77.21 Gbp 43.12x 33.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.79 Gbp.
Last upload on 12 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 22 July 2023
rElgMul1.pri.cur.20230722.fasta.gz (517.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 135.65 Mbp 1 220.13 Mbp
20 3 117.24 Mbp 2 184.28 Mbp
30 5 108.53 Mbp 3 176.34 Mbp
40 6 107.86 Mbp 4 149.10 Mbp
50 8 85.76 Mbp 6 121.99 Mbp
60 11 56.49 Mbp 7 117.24 Mbp
70 15 35.92 Mbp 9 101.85 Mbp
80 21 22.26 Mbp 11 48.84 Mbp
90 32 10.60 Mbp 15 33.44 Mbp
100 107 12.11 Kbp 34 12.11 Kbp
1.000x 107 1.79 Gbp 34 1.79 Gbp
NG based on genome size 1.79 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 22 July 2023
rElgMul1.alt.cur.20230722.fasta.gz (522.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 135.24 Mbp 1 204.63 Mbp
20 3 110.24 Mbp 2 176.53 Mbp
30 5 100.50 Mbp 3 163.85 Mbp
40 6 96.48 Mbp 5 135.24 Mbp
50 9 76.55 Mbp 6 115.42 Mbp
60 11 62.49 Mbp 8 101.21 Mbp
70 15 35.23 Mbp 10 96.48 Mbp
80 22 22.34 Mbp 13 33.70 Mbp
90 34 10.40 Mbp 20 20.09 Mbp
100 677 11.54 Kbp 649 11.54 Kbp
1.000x 677 1.81 Gbp 649 1.81 Gbp
NG based on genome size 1.79 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 15 June 2023
rElgMul1.MT.20230615.fasta.gz (5.6 KiB)

Quality: not computed
Assembly Metadata
assembly_CCGP_standard/rElgMul1.yml (view)
species: Elgaria multicarinata
specimen: rElgMul1
projects: 
  - vgp
data_location: S3
release_to: S3
primary: s3://genomeark/species/Elgaria_multicarinata/rElgMul1/assembly_CCGP_standard/rElgMul1.pri.asm.20220419.fasta.gz
haplotigs: s3://genomeark/species/Elgaria_multicarinata/rElgMul1/assembly_CCGP_standard/rElgMul1.alt.asm.20220419.fasta.gz
pretext: s3://genomeark/species/Elgaria_multicarinata/rElgMul1/assembly_CCGP_standard/evaluation/pretext/rElgMul1.pri.asm.20220419.pretext
mito: s3://genomeark/species/Elgaria_multicarinata/rElgMul1/assembly_MT_rockefeller/rElgMul1.MT.20230615.fasta.gz
pacbio_read_dir: s3://genomeark/species/Elgaria_multicarinata/rElgMul1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Elgaria_multicarinata/rElgMul1/genomic_data/dovetail/
pipeline:
  - hifiasm
  - purge_dups
  - SALSA2
assembled_by_group: CCGP
notes: This was a primary assemblhy of rElgMul1 produced by CCGP, assembled by Merly Escalona. This is a Phase 1 sample that we are submitting for a curation.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.