Eudromia elegans

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bEudEle1 57.92 Gbp N/A 31.3 GiB
Arima bEudEle1 372.85 Gbp N/A 184.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 13 November 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bEudEle1 PacBio HiFi (.fq) 57.92 Gbp N/A 31.3 GiB
Arima 372.85 Gbp N/A 184.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 13 November 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 28 November 2024
bEudEle1.hap1.cur.20241128.fasta.gz (306.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 35.52 Mbp 1 189.96 Mbp
20 7 20.21 Mbp 2 142.85 Mbp
30 13 17.70 Mbp 3 113.33 Mbp
40 20 14.46 Mbp 3 113.33 Mbp
50 29 11.63 Mbp 5 66.80 Mbp
60 40 8.29 Mbp 7 47.96 Mbp
70 56 5.58 Mbp 10 30.22 Mbp
80 84 3.03 Mbp 15 18.89 Mbp
90 133 1.52 Mbp 23 8.62 Mbp
100 696 1.00 Kbp 397 1.00 Kbp
1.000x 696 1.11 Gbp 397 1.11 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 28 November 2024
bEudEle1.hap2.cur.20241128.fasta.gz (269.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 34.48 Mbp 1 190.22 Mbp
20 6 25.92 Mbp 2 142.70 Mbp
30 10 21.91 Mbp 2 142.70 Mbp
40 15 18.77 Mbp 3 112.84 Mbp
50 20 15.22 Mbp 4 66.55 Mbp
60 28 11.62 Mbp 6 35.82 Mbp
70 37 8.60 Mbp 9 24.01 Mbp
80 52 4.95 Mbp 14 17.90 Mbp
90 85 1.74 Mbp 21 9.18 Mbp
100 544 1.00 Kbp 360 1.00 Kbp
1.000x 544 0.97 Gbp 360 0.97 Gbp
NG based on genome size .
Assembly Metadata
assembly_yggdrasil/bEudEle1.yml (view)
species: Eudromia elegans
specimen: bEudEle1
projects: 
  - VGP
assembled_by_group: Yggdrasil
data_location: S3
release_to: S3
combine_for_curation: true
hap1: s3://genomeark/species/Eudromia_elegans/bEudEle1/assembly_yggdrasil/bEudEle1.gap_closing.hap1.fasta.gz
hap2: s3://genomeark/species/Eudromia_elegans/bEudEle1/assembly_yggdrasil/bEudEle1.gap_closing.hap2.fasta.gz
pretext_hap1: s3://genomeark/species/Eudromia_elegans/bEudEle1/assembly_yggdrasil/evaluation/hap1/pretext/bEudEle1_hap1_QC_multimapping.pretext
pretext_hap2: s3://genomeark/species/Eudromia_elegans/bEudEle1/assembly_yggdrasil/evaluation/hap2/pretext/bEudEle1_hap2_QC_multimapping.pretext
kmer_spectra_img: s3://genomeark/species/Eudromia_elegans/bEudEle1/assembly_yggdrasil/evaluation/merqury/bEudEle1_png/
pacbio_read_dir: s3://genomeark/species/Eudromia_elegans/bEudEle1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Eudromia_elegans/bEudEle1/genomic_data/arima/
pipeline: 
  - hifiasm (0.16)
  - yahs (1.1)
notes: This was a Hifiasm-HiC assembly of bEudEle1. The Arima HiC reads require trimming. This is a VGP Phase 1 species we are submitting for curation, mainly of the microchromosomes as these have not been curated or named.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.