Euleptes europaea

tarantolino

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank rEulEur1: GCA_029931755.1 rEulEur1: GCA_029931775.1
ENA rEulEur1: GCA_029931755.1 rEulEur1: GCA_029931775.1
UCSC Genome Browser rEulEur1: GCA_029931755.1 rEulEur1: GCA_029931775.1

metadata.yaml (view) (edit on github)
species:
  name: Euleptes europaea
  individuals:
  - short_name: rEulEur1
  short_name: rEulEur
  taxon_id: 460621
  common_name: tarantolino
  genome_size: 2533000000
  genome_size_method: GoAT
  order:
    name: Squamata
  family:
    name: Sphaerodactylidae
  project: [ vgp ]
CC BY 3.0 Benny Trapp (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fa) rEulEur1 20.60 Gbp 8.13x 21.7 GiB
PacBio HiFi (.bam) rEulEur1 48.38 Gbp 19.10x 169.6 GiB
Bionano rEulEur1 N/A 189.47x 880.0 MiB
Arima rEulEur1 251.93 Gbp 99.46x 124.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.53 Gbp.
Last upload on 26 July 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rEulEur1 PacBio HiFi (.fa) 20.60 Gbp 8.13x 21.7 GiB
PacBio HiFi (.bam) 48.38 Gbp 19.10x 169.6 GiB
Bionano N/A 189.47x 880.0 MiB
Arima 251.93 Gbp 99.46x 124.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.53 Gbp.
Last upload on 26 July 2022.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 12 October 2022
rEulEur1.hap1.cur.20221012.fasta.gz (513.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 50.59 Mbp 1 141.84 Mbp
20 8 41.92 Mbp 3 123.84 Mbp
30 15 33.05 Mbp 5 109.33 Mbp
40 24 23.27 Mbp 8 93.21 Mbp
50 37 16.42 Mbp 11 71.03 Mbp
60 59 6.84 Mbp 15 57.21 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.698x 736 1.77 Gbp 583 1.77 Gbp
NG based on genome size 2.53 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 31 July 2022
rEulEur1.HiC.hap2.20220731.fasta.gz (515.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 57.60 Mbp 1 141.76 Mbp
20 8 47.36 Mbp 3 124.77 Mbp
30 14 33.97 Mbp 5 109.23 Mbp
40 22 27.02 Mbp 8 92.03 Mbp
50 35 14.77 Mbp 11 70.96 Mbp
60 62 5.93 Mbp 15 56.62 Mbp
70 0 203 18.02 Kbp
80 0 0
90 0 0
100 0 0
0.699x 558 1.77 Gbp 381 1.78 Gbp
NG based on genome size 2.53 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 21 November 2022
rEulEur1.MT.20221121.fasta.gz (5.0 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/rEulEur1_hap2.yaml (view)
species: Euleptes europaea
specimen: rEulEur1
projects: 
  - vgp
hap1: s3://genomeark/species/Euleptes_europaea/rEulEur1/assembly_vgp_HiC_2.0/rEulEur1.HiC.hap1.20220731.fasta.gz
hap2: s3://genomeark/species/Euleptes_europaea/rEulEur1/assembly_vgp_HiC_2.0/rEulEur1.HiC.hap2.20220731.fasta.gz
kmer_spectra_img: s3://genomeark/species/Euleptes_europaea/rEulEur1/assembly_vgp_HiC_2.0/evaluation/rEulEur1_png/
pacbio_read_dir: s3://genomeark/species/Euleptes_europaea/rEulEur1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Euleptes_europaea/rEulEur1/genomic_data/arima/
bionano_cmap_dir: s3://genomeark/species/Euleptes_europaea/rEulEur1/genomic_data/bionano/
pipeline:
  - hifiasm (0.16.1+galaxy2)
  - solve (3.7.0+galaxy0)
  - yahs (1.2a+galaxy1)
assembled_by_group: Rockefeller
notes: Please curate hap2 ( rEulEur1.HiC.hap2.20220731.fasta.gz ), hap1 is linked here in case it is useful as well
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.