Gaidropsarus vulgaris

three-bearded rockling

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fGaiVul
  name: Gaidropsarus vulgaris
  taxon_id: 348057
  common_name: three-bearded rockling
  order:
    name: Gadiformes
  family:
    name: Lotidae
  individuals:
    - short_name: fGaiVul1
      biosample_id: SAMEA114298641
      sex:
  genome_size: 811740000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fGaiVul1 33.79 Gbp 41.63x 11.0 GiB
Arima fGaiVul1 73.94 Gbp 91.08x 22.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.81 Gbp.
Last upload on 29 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fGaiVul1 PacBio HiFi (.bam) 33.79 Gbp 41.63x 11.0 GiB
Arima 73.94 Gbp 91.08x 22.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.81 Gbp.
Last upload on 29 March 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 15 May 2024
fGaiVul1.pri.asm.20240515.fasta.gz (156.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 26 2.37 Mbp 4 25.15 Mbp
20 67 1.61 Mbp 7 23.64 Mbp
30 125 1.22 Mbp 10 22.26 Mbp
40 208 0.82 Mbp 14 21.54 Mbp
50 328 0.55 Mbp 18 20.17 Mbp
60 525 289.20 Kbp 22 16.91 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.687x 1390 0.56 Gbp 415 0.56 Gbp
NG based on genome size 0.81 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 15 May 2024
fGaiVul1.alt.asm.20240515.fasta.gz (177.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 64 0.97 Mbp 64 0.97 Mbp
20 169 0.64 Mbp 169 0.64 Mbp
30 318 452.56 Kbp 318 452.56 Kbp
40 534 308.05 Kbp 534 308.05 Kbp
50 863 198.63 Kbp 863 199.05 Kbp
60 1407 112.16 Kbp 1406 112.16 Kbp
70 2574 43.16 Kbp 2573 43.16 Kbp
80 5774 14.28 Kbp 5772 14.28 Kbp
90 0 0
100 0 0
0.805x 6156 0.65 Gbp 6154 0.65 Gbp
NG based on genome size 0.81 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 May 2024
fGaiVul1.MT.20240515.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.