Gallinula chloropus

common moorhen

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bGalChl
  name: Gallinula chloropus
  taxon_id: 9123
  common_name: common moorhen
  order:
    name: Gruiformes
  family:
    name: Rallidae
  individuals:
    - short_name: bGalChl1
      biosample_id: SAMEA113398958
      sex: male
  genome_size: 1496340000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bGalChl1 51.08 Gbp 34.14x 15.4 GiB
Arima bGalChl1 57.18 Gbp 38.21x 16.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.50 Gbp.
Last upload on 29 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bGalChl1 PacBio HiFi (.bam) 51.08 Gbp 34.14x 15.4 GiB
Arima 57.18 Gbp 38.21x 16.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.50 Gbp.
Last upload on 29 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 17 August 2024
bGalChl1.hap1.cur.20240817.fasta.gz (356.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 9.19 Mbp 1 215.89 Mbp
20 33 6.23 Mbp 2 164.19 Mbp
30 59 4.99 Mbp 3 122.94 Mbp
40 93 4.04 Mbp 5 90.34 Mbp
50 136 2.98 Mbp 6 82.23 Mbp
60 196 2.07 Mbp 11 23.22 Mbp
70 292 1.16 Mbp 18 16.81 Mbp
80 499 418.75 Kbp 44 0.98 Mbp
90 0 0
100 0 0
0.857x 1421 1.28 Gbp 818 1.28 Gbp
NG based on genome size 1.50 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 17 August 2024
bGalChl1.hap2.cur.20240817.fasta.gz (346.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 9.00 Mbp 1 213.69 Mbp
20 34 6.26 Mbp 2 163.78 Mbp
30 61 4.98 Mbp 3 123.33 Mbp
40 94 4.04 Mbp 5 87.26 Mbp
50 136 3.08 Mbp 6 82.55 Mbp
60 196 2.02 Mbp 11 23.44 Mbp
70 296 1.09 Mbp 19 14.34 Mbp
80 620 92.52 Kbp 127 139.81 Kbp
90 0 0
100 0 0
0.808x 931 1.21 Gbp 395 1.21 Gbp
NG based on genome size 1.50 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 April 2024
bGalChl1.MT.20240410.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.