Grampus griseus

Risso's dolphin

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mGraGri
  name: Grampus griseus
  taxon_id: 83653
  common_name: Risso's dolphin
  order:
    name: Cetacea
  family:
    name: Delphinidae
  individuals:
    - short_name: mGraGri1
      biosample_id: SAMEA111380541
      sex: male
    - short_name: mGraGri2
      biosample_id: SAMEA114493130
      sex: male
  genome_size: 3080700000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mGraGri1 72.06 Gbp 23.39x 21.5 GiB
Arima mGraGri1 438.11 Gbp 142.21x 135.0 GiB
mGraGri2 622.63 Gbp 202.11x 169.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 23 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mGraGri1 PacBio HiFi (.bam) 72.06 Gbp 23.39x 21.5 GiB
Arima 438.11 Gbp 142.21x 135.0 GiB
mGraGri2 Arima 622.63 Gbp 202.11x 169.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 23 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 28 November 2024
mGraGri1.hap1.cur.20241128.fasta.gz (721.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 7.09 Mbp 2 177.00 Mbp
20 83 5.33 Mbp 4 144.35 Mbp
30 148 4.24 Mbp 6 131.18 Mbp
40 228 3.44 Mbp 9 110.54 Mbp
50 333 2.54 Mbp 12 103.03 Mbp
60 474 1.84 Mbp 15 88.75 Mbp
70 682 1.18 Mbp 19 80.08 Mbp
80 1063 0.53 Mbp 93 0.78 Mbp
90 0 0
100 0 0
0.866x 2284 2.67 Gbp 1146 2.67 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 28 November 2024
mGraGri1.hap2.cur.20241128.fasta.gz (668.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 7.20 Mbp 2 176.75 Mbp
20 82 5.29 Mbp 4 144.15 Mbp
30 149 4.12 Mbp 6 115.06 Mbp
40 233 3.07 Mbp 9 105.49 Mbp
50 349 2.32 Mbp 12 89.73 Mbp
60 510 1.57 Mbp 16 83.82 Mbp
70 778 0.78 Mbp 20 58.62 Mbp
80 0 0
90 0 0
100 0 0
0.780x 2135 2.40 Gbp 1062 2.40 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 14 May 2024
mGraGri1.MT.20240514.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.