Haematopus ostralegus

Eurasian oystercatcher

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bHaeOst
  name: Haematopus ostralegus
  taxon_id: 31908
  common_name: Eurasian oystercatcher
  order:
    name: Charadriiformes
  family:
    name: Haematopodidae
  individuals:
    - short_name: bHaeOst1
      biosample_id: SAMEA115432997
      sex: male
  genome_size: 1418100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bHaeOst1 90.47 Gbp 63.80x 30.6 GiB
Arima bHaeOst1 71.31 Gbp 50.29x 19.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 20 July 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bHaeOst1 PacBio HiFi (.bam) 90.47 Gbp 63.80x 30.6 GiB
Arima 71.31 Gbp 50.29x 19.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 20 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 20 July 2024
bHaeOst1.hap1.asm.20240720.fasta.gz (313.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 12.54 Mbp 1 220.60 Mbp
20 24 9.04 Mbp 2 168.17 Mbp
30 42 6.92 Mbp 3 133.08 Mbp
40 65 5.52 Mbp 4 88.32 Mbp
50 94 4.22 Mbp 6 85.60 Mbp
60 133 3.18 Mbp 7 73.58 Mbp
70 187 2.24 Mbp 12 24.70 Mbp
80 267 1.40 Mbp 19 15.08 Mbp
90 468 286.68 Kbp 71 0.52 Mbp
100 0 0
0.921x 781 1.31 Gbp 338 1.31 Gbp
NG based on genome size 1.42 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 20 July 2024
bHaeOst1.hap2.asm.20240720.fasta.gz (312.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 12.88 Mbp 1 220.43 Mbp
20 23 8.44 Mbp 2 169.32 Mbp
30 42 6.96 Mbp 3 131.39 Mbp
40 65 5.48 Mbp 4 88.12 Mbp
50 93 4.36 Mbp 6 85.32 Mbp
60 130 3.40 Mbp 7 73.54 Mbp
70 184 2.18 Mbp 12 24.79 Mbp
80 265 1.33 Mbp 19 14.05 Mbp
90 512 154.00 Kbp 104 207.00 Kbp
100 0 0
0.911x 817 1.29 Gbp 378 1.29 Gbp
NG based on genome size 1.42 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 July 2024
bHaeOst1.MT.20240720.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.