Heliangelus exortis

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bHelExo1 1131.30 Gbp N/A 1.9 TiB
PacBio HiFi (.fq) bHelExo1 48.08 Gbp N/A 36.4 GiB
PacBio HiFi (.bam) bHelExo1 148.62 Gbp N/A 509.4 GiB
Arima bHelExo1 67.54 Gbp N/A 35.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 16 August 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bHelExo1 PacBio HiFi (subreads) 1131.30 Gbp N/A 1.9 TiB
PacBio HiFi (.fq) 48.08 Gbp N/A 36.4 GiB
PacBio HiFi (.bam) 148.62 Gbp N/A 509.4 GiB
Arima 67.54 Gbp N/A 35.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 16 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 4 August 2023
bHelExo1.hap1.cur.20230804.fasta.gz (302.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 22.57 Mbp 1 198.23 Mbp
20 9 18.78 Mbp 2 151.57 Mbp
30 16 13.54 Mbp 2 151.57 Mbp
40 24 10.52 Mbp 3 115.48 Mbp
50 36 8.41 Mbp 4 73.90 Mbp
60 50 5.86 Mbp 7 38.99 Mbp
70 70 4.27 Mbp 10 26.41 Mbp
80 103 2.45 Mbp 14 19.43 Mbp
90 166 1.18 Mbp 21 13.93 Mbp
100 568 8.59 Kbp 131 14.37 Kbp
1.000x 568 1.05 Gbp 131 1.05 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 4 August 2023
bHelExo1.hap2.cur.20230804.fasta.gz (277.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 24.35 Mbp 1 197.09 Mbp
20 8 18.91 Mbp 1 197.09 Mbp
30 14 13.56 Mbp 2 150.17 Mbp
40 22 11.38 Mbp 3 115.54 Mbp
50 32 9.82 Mbp 4 44.47 Mbp
60 43 7.40 Mbp 6 38.99 Mbp
70 59 4.86 Mbp 9 26.13 Mbp
80 86 2.69 Mbp 14 18.81 Mbp
90 143 1.12 Mbp 20 11.22 Mbp
100 571 2.84 Kbp 201 12.15 Kbp
1.000x 571 0.97 Gbp 201 0.97 Gbp
NG based on genome size .
Assembly Metadata
assembly_vgp_HiC_2.0/bHelExo1_hap1.yml (view)
species: Heliangelus exortis
specimen: bHelExo1
projects: 
  - vgp
data_location: S3
release_to: S3
haplotype_to_curate: hap1
hap1: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/bHelExo1.HiC.hap1.20230419.fasta.gz
hap2: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/bHelExo1.HiC.hap2.20230419.fasta.gz
pretext_hap1: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/bHelExo1_hap1__s2_heatmap.pretext
pretext_hap2: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/bHelExo1_hap2__s2_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/evaluation/merqury_postpurge/bHelExo1_png/
pacbio_read_dir: s3://genomeark/species/Heliangelus_exortis/bHelExo1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Heliangelus_exortis/bHelExo1/genomic_data/arima/
pipeline:
  - hifiasm (0.19.3+galaxy0)
  - purge_dups (1.2.6+galaxy0)
  - yahs (1.2a.2+galaxy0)
assembled_by_group: Rockefeller
notes: This was a hifiasm-HiC assembly of bHelExo1, resulting in two complete haplotypes. This individual did not have bionano data. HiC scaffolding was performed with yahs. K-mer spectra indicates a heterogametic specimen specimen. The HiC prep was Arima kit 2. I am submitting both hap1 & hap2 for dual curation. This is the curation ticket for hap1. 
assembly_vgp_HiC_2.0/bHelExo1_hap2.yml (view)
species: Heliangelus exortis
specimen: bHelExo1
projects: 
  - vgp
data_location: S3
release_to: S3
haplotype_to_curate: hap2
hap1: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/bHelExo1.HiC.hap1.20230419.fasta.gz
hap2: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/bHelExo1.HiC.hap2.20230419.fasta.gz
pretext_hap1: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/bHelExo1_hap1__s2_heatmap.pretext
pretext_hap2: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/bHelExo1_hap2__s2_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Heliangelus_exortis/bHelExo1/assembly_vgp_HiC_2.0/evaluation/merqury_postpurge/bHelExo1_png/
pacbio_read_dir: s3://genomeark/species/Heliangelus_exortis/bHelExo1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Heliangelus_exortis/bHelExo1/genomic_data/arima/
pipeline:
  - hifiasm (0.19.3+galaxy0)
  - purge_dups (1.2.6+galaxy0)
  - yahs (1.2a.2+galaxy0)
assembled_by_group: Rockefeller
notes: This was a hifiasm-HiC assembly of bHelExo1, resulting in two complete haplotypes. This individual did not have bionano data. HiC scaffolding was performed with yahs. K-mer spectra indicates a heterogametic specimen specimen. The HiC prep was Arima kit 2. I am submitting both hap1 & hap2 for dual curation. This is the curation ticket for hap2. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.