Heterohyrax brucei

Yellow-spotted hyrax

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mHetBru1: GCA_028571685.1 mHetBru1: GCA_028571665.1
ENA mHetBru1: GCA_028571685.1 mHetBru1: GCA_028571665.1
UCSC Genome Browser mHetBru1: GCA_028571685.1 mHetBru1: GCA_028571665.1

metadata.yaml (view) (edit on github)
species:
  short_name: mHetBru
  name: Heterohyrax brucei
  taxon_id: 77598
  common_name: Yellow-spotted hyrax
  order:
    name: Hyracoidea
  family:
    name: Procaviidae
  individuals:
    - short_name: mHetBru1
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mHetBru1 2177.89 Gbp 624.39x 3.7 TiB
PacBio HiFi (.bam) mHetBru1 122.23 Gbp 35.04x 80.9 GiB
Bionano mHetBru1 N/A 148.72x 1.2 GiB
Arima mHetBru1 338.40 Gbp 97.02x 146.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.49 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mHetBru1 PacBio HiFi (subreads) 2177.89 Gbp 624.39x 3.7 TiB
PacBio HiFi (.bam) 122.23 Gbp 35.04x 80.9 GiB
Bionano N/A 148.72x 1.2 GiB
Arima 338.40 Gbp 97.02x 146.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.49 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 August 2022
mHetBru1.pri.cur.20220808.fasta.gz (1.0 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 171.56 Mbp 1 216.37 Mbp
20 4 137.13 Mbp 3 199.36 Mbp
30 6 135.11 Mbp 5 197.09 Mbp
40 9 109.60 Mbp 7 154.71 Mbp
50 13 78.50 Mbp 9 139.65 Mbp
60 18 57.11 Mbp 11 138.96 Mbp
70 25 42.84 Mbp 14 110.24 Mbp
80 34 32.42 Mbp 18 90.30 Mbp
90 52 15.25 Mbp 22 82.59 Mbp
100 337 4.89 Kbp 61 17.89 Kbp
1.000x 338 3.49 Gbp 62 3.49 Gbp
NG based on genome size 3.49 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 8 August 2022
mHetBru1.alt.cur.20220808.fasta.gz (861.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 35 6.46 Mbp 34 6.48 Mbp
20 89 4.84 Mbp 88 4.84 Mbp
30 161 3.77 Mbp 160 3.77 Mbp
40 250 3.03 Mbp 249 3.03 Mbp
50 361 2.41 Mbp 360 2.41 Mbp
60 500 1.96 Mbp 499 1.96 Mbp
70 674 1.51 Mbp 673 1.51 Mbp
80 917 1.01 Mbp 916 1.01 Mbp
90 1308 0.56 Mbp 1307 0.56 Mbp
100 4168 10.14 Kbp 4167 10.14 Kbp
1.000x 4169 3.02 Gbp 4168 3.02 Gbp
NG based on genome size 3.49 Gbp.
Assembly Metadata
mHetBru1.yaml (view)
species: Heterohyrax_brucei
specimen: mHetBru1
projects:
  - VGP orders
primary:
s3://genomeark/species/Heterohyrax_brucei/mHetBru1/assembly_vgp_standard_2.1/mHetBru1.pri.20211110.fasta.gz
haplotigs:
s3://genomeark/species/Heterohyrax_brucei/mHetBru1/assembly_vgp_standard_2.1/mHetBru1.alt.20211110.fasta.gz
pipeline:
  - hifiasm (0.15.5-r352)
  - purge_dups (1.2.3)
  - bionano_solve (Solve3.6.1_11162020)
  - salsa (v2.2)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.