Hippoglossus hippoglossus

Atlantic halibut

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fHipHip1: GCA_009819705.1 fHipHip1: GCA_009819745.1
ENA fHipHip1: GCA_009819705.1 fHipHip1: GCA_009819745.1
UCSC Genome Browser fHipHip1: GCA_009819705.1 fHipHip1: GCA_009819745.1

metadata.yaml (view) (edit on github)
species:
  common_name: Atlantic halibut
  family:
    name: Pleuronectidae
  genome_size: 1000000000
  genome_size_method: null
  individuals:
  - short_name: fHipHip1
  name: Hippoglossus hippoglossus
  order:
    name: Pleuronectiformes
  short_name: fHipHip
  taxon_id: 8267
  project: [ vgp ]
public domain
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fHipHip1 56.29 Gbp 56.29x 97.5 GiB
10x fHipHip1 73.63 Gbp 73.63x 37.7 GiB
Bionano fHipHip1 N/A 496.25x 677.0 MiB
Arima fHipHip1 192.21 Gbp 192.21x 100.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 2 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fHipHip1 PacBio CLR 56.29 Gbp 56.29x 97.5 GiB
10x 73.63 Gbp 73.63x 37.7 GiB
Bionano N/A 496.25x 677.0 MiB
Arima 192.21 Gbp 192.21x 100.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 2 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 25 November 2019
fHipHip1.pri.cur.20191125.fasta.gz (172.1 MiB)

Quality: 78.6 errors/Mb (QV=41.05)

Contigs Scaffolds
NG LG Len LG Len
10 5 17.54 Mbp 3 29.17 Mbp
20 11 11.80 Mbp 6 28.51 Mbp
30 22 7.02 Mbp 10 26.31 Mbp
40 40 4.20 Mbp 14 24.74 Mbp
50 77 1.52 Mbp 18 21.26 Mbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.593x 346 0.59 Gbp 56 0.60 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 25 November 2019
fHipHip1.alt.cur.20191125.fasta.gz (198.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 34 2.18 Mbp 34 2.18 Mbp
20 93 1.41 Mbp 93 1.41 Mbp
30 178 0.97 Mbp 178 0.97 Mbp
40 307 0.58 Mbp 307 0.58 Mbp
50 559 257.95 Kbp 558 258.43 Kbp
60 1525 55.94 Kbp 1512 56.85 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.677x 4115 0.68 Gbp 4053 0.68 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
fHipHip1.MT.20191004.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.